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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC559
Library SL
(Link to library)
Clone ID SLC559
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12055-1
Original site URL
Representative seq. ID SLC559Z
(Link to Original site)
Representative DNA sequence 
>SLC559 (SLC559Q) /CSM/SL/SLC5-C/SLC559Q.Seq.d/
XXXXXXXXXXGTCAATCAGAAAGAAAGAGTACAGTGATCAAACTGGTAATCCATCACCAG
CAAAAGACTCTGATAATAAACCAACCACTTCAATCTCTGTTGGTATCACACCAACCAAGA
GAACAACTCAAGCTTCACCACCATCACCACCATTAACTCCAACTCAACAAGCCGCTGGCA
CCCCAACTTTACCACCAAGACCATTAATGAAGAAACCAGCTCCATCTCAAGCCCCATCTT
CACCAGTCGCTCCAGTTTCTGCTCCAGTTTCAAAACCATCACCAAAACCAGCACCAAAAC
CAGCTGCTCCAACTGCTGCCGCTCCAAATAAAACTTATACCCTTGAAGAATTAAAAAAGA
AACCAGCAAACATTGATCATAGTAATTTAGAAATTTATCTTTCCGATGAAGAATTTAAAG
CTGTATTCAATTGTGAACGTTCTGAATTAGCTGCTATGCCAACCTGGAAGAGAAATAATA
TAAAAACTAAACTTGGTTTATTCTAAAAAAAAATAATAATAATAATAATTAAAAAAACTA
AAAAAAAAAAAAACACTAATAATTT
sequence update 1998. 5. 8
Translated Amino Acid sequence 
---SIRKKEYSDQTGNPSPAKDSDNKPTTSISVGITPTKRTTQASPPSPPLTPTQQAAGT
PTLPPRPLMKKPAPSQAPSSPVAPVSAPVSKPSPKPAPKPAAPTAAAPNKTYTLEELKKK
PANIDHSNLEIYLSDEEFKAVFNCERSELAAMPTWKRNNIKTKLGLF*kkiiiiiikktk
kkkntnn
Translated Amino Acid sequence (All Frames) 
Frame A:
---SIRKKEYSDQTGNPSPAKDSDNKPTTSISVGITPTKRTTQASPPSPPLTPTQQAAGT
PTLPPRPLMKKPAPSQAPSSPVAPVSAPVSKPSPKPAPKPAAPTAAAPNKTYTLEELKKK
PANIDHSNLEIYLSDEEFKAVFNCERSELAAMPTWKRNNIKTKLGLF*kkiiiiiikktk
kkkntnn


Frame B:
---qserkstviklvihhqqktliinqplqsllvshqpreqlklhhhhhh*lqlnkplap
qlyhqdh**rnqlhlkphlhqslqfllqfqnhhqnqhqnqllqllplqikliplkn*krn
qqtliivi*kfifpmknlklysivnvln*llcqpgreii*klnlvyskkk*****lkklk
kkktlii


Frame C:
---nqkervq*snw*sitskrl***tnhfnlcwyhtnqennssfttittinsnstsrwhp
nfttktineetssisspiftsrssfcssfktitktstktscsnccrsk*nlyp*rikket
skh*s**frnlsfr*ri*sciql*tf*iscyanleek*ykn*twfilkknnnnnn*kn*k
kkkh**f
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC559 (SLC559Q) /CSM/SL/SLC5-C/SLC559Q.Seq.d/                        932   0.0
SLC560 (SLC560Q) /CSM/SL/SLC5-C/SLC560Q.Seq.d/                        930   0.0
SHC428 (SHC428Q) /CSM/SH/SHC4-B/SHC428Q.Seq.d/                        914   0.0
SLB823 (SLB823Q) /CSM/SL/SLB8-A/SLB823Q.Seq.d/                        908   0.0
SLI235 (SLI235Q) /CSM/SL/SLI2-B/SLI235Q.Seq.d/                        880   0.0
SLE513 (SLE513Q) /CSM/SL/SLE5-A/SLE513Q.Seq.d/                        850   0.0
SLF810 (SLF810Q) /CSM/SL/SLF8-A/SLF810Q.Seq.d/                        494   e-139
SSL801 (SSL801Q) /CSM/SS/SSL8-A/SSL801Q.Seq.d/                        355   5e-97
SLJ553 (SLJ553Q) /CSM/SL/SLJ5-C/SLJ553Q.Seq.d/                        198   6e-50
VHP393 (VHP393Q) /CSM/VH/VHP3-D/VHP393Q.Seq.d/                         42   0.009
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB023655) Dictyostelium discoideum talB mRNA for talin homo...   914   0.0    1
(AU034310) Dictyostelium discoideum slug cDNA, clone SLC560.      914   0.0    1
(AU034309) Dictyostelium discoideum slug cDNA, clone SLC559.      914   0.0    1
(BJ404375) Dictyostelium discoideum cDNA clone:dds28h08, 3' ...   898   0.0    1
(AU034029) Dictyostelium discoideum slug cDNA, clone SLB823.      892   0.0    1
(AU053252) Dictyostelium discoideum slug cDNA, clone SLI235.      864   0.0    1
(AU035025) Dictyostelium discoideum slug cDNA, clone SLE513.      835   0.0    1
(AU053144) Dictyostelium discoideum slug cDNA, clone SLF810.      478   e-130  1
(AU074765) Dictyostelium discoideum slug cDNA, clone SSL801.      339   7e-89  1
(AU053721) Dictyostelium discoideum slug cDNA, clone SLJ553.      182   9e-42  1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K81) RecName: Full=Talin-B;                                       184   1e-45
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...   184   1e-45
U88311_9(U88311|pid:none) Caenorhabditis elegans cosmid C10H11, ...    54   2e-06
BC135895_1(BC135895|pid:none) Xenopus tropicalis hypothetical pr...    48   1e-04
AJ427856_1(AJ427856|pid:none) Dictyostelium discoideum ORF encod...    46   6e-04
(Q8WQ85) RecName: Full=Villidin;                                       46   6e-04
AF118397_1(AF118397|pid:none) Entamoeba histolytica actin-bindin...    45   0.002
AE014296_486(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.002
AE014296_485(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.002
BT031169_1(BT031169|pid:none) Drosophila melanogaster SD07506 fu...    44   0.002
protein update 2009. 6. 2
PSORT 

 psg: 0.70  gvh: 0.41  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SLC559 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC559Z
3' end seq. 
>SLC559Z.Seq
----------GTCAATCAGAAAGAAAGAGTACAGTGATCAAACTGGTAATCCATCACCAG
CAAAAGACTCTGATAATAAACCAACCACTTCAATCTCTGTTGGTATCACACCAACCAAGA
GAACAACTCAAGCTTCACCACCATCACCACCATTAACTCCAACTCAACAAGCCGCTGGCA
CCCCAACTTTACCACCAAGACCATTAATGAAGAAACCAGCTCCATCTCAAGCCCCATCTT
CACCAGTCGCTCCAGTTTCTGCTCCAGTTTCAAAACCATCACCAAAACCAGCACCAAAAC
CAGCTGCTCCAACTGCTGCCGCTCCAAATAAAACTTATACCCTTGAAGAATTAAAAAAGA
AACCAGCAAACATTGATCATAGTAATTTAGAAATTTATCTTTCCGATGAAGAATTTAAAG
CTGTATTCAATTGTGAACGTTCTGAATTAGCTGCTATGCCAACCTGGAAGAGAAATAATA
TAAAAACTAAACTTGGTTTATTCTAAAAAAAAATAATAATAATAATAATTAAAAAAACTA
AAAAAAAAAAAAACACTAATAATTT
Length of 3' end seq. 555
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -