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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC539
Library SL
(Link to library)
Clone ID SLC539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12910-1
Original site URL
Representative seq. ID SLC539Z
(Link to Original site)
Representative DNA sequence 
>SLC539 (SLC539Q) /CSM/SL/SLC5-B/SLC539Q.Seq.d/
XXXXXXXXXXTGATAGATACAACAACAACCGTGACAACGATAGAAAAGACGATCGTTTCA
GCAATGGTGTTTCCCCATTCAACTTCAAGAATAACAATAACCGTGATCGTGATGGTGGTG
ATAGATACAATAACAATAGAAACAGTGGTGATAGAGATCAAGGTGGTTACAGAGGTACTC
AAGATCGTGAAGGTGGTGACAGATACAACAATAACAACAGAGACGGCGGTTATAACAGAG
GTGGTTATGGTGGTAATCGTGATGGTGGTGATAGAGAAAGAAATCCATTCGGTGGTTCCC
CAAGAAACTACGATAACAACAGAAATGATCGTCCAAGAGAAGAACGTAGACCATTCGTAT
CAAAAGTTGACTCTGTTGATGATTGGAGAAACCCATCTGAAGATGTATCCACTAATGCAT
TCAACAAACAAAGAAAACCAGCATTCAATAACAACAATGAGCAAAGAAGTTATAACAATA
ATAACAACTATCAAAGACGTGACAACAACGAACAACATGATCAACAAAACTAAATCAATT
TAATAATTTCCAACATTTTAAAAAAACAAC
sequence update 1998. 5. 8
Translated Amino Acid sequence 
---IDTTTTVTTIEKTIVSAMVFPHSTSRITITVIVMVVIDTITIETVVIEIKVVTEVLK
IVKVVTDTTITTETAVITEVVMVVIVMVVIEKEIHSVVPQETTITTEMIVQEKNVDHSYQ
KLTLLMIGETHLKMYPLMHSTNKENQHSITTMSKEVITIITTIKDVTTTNNMINKTKSI*
*fptf*knn
Translated Amino Acid sequence (All Frames) 
Frame A:
---drynnnrdndrkddrfsngvspfnfknnnnrdrdggdrynnnrnsgdrdqggyrgtq
dreggdrynnnnrdggynrggyggnrdggdrernpfggsprnydnnrndrpreerrpfvs
kvdsvddwrnpsedvstnafnkqrkpafnnnneqrsynnnnnyqrrdnneqhdqqn*inl
iisnilkkq


Frame B:
---IDTTTTVTTIEKTIVSAMVFPHSTSRITITVIVMVVIDTITIETVVIEIKVVTEVLK
IVKVVTDTTITTETAVITEVVMVVIVMVVIEKEIHSVVPQETTITTEMIVQEKNVDHSYQ
KLTLLMIGETHLKMYPLMHSTNKENQHSITTMSKEVITIITTIKDVTTTNNMINKTKSI*
*fptf*knn


Frame C:
---*iqqqp*qr*krrsfqqwcfpiqlqe*q*p*s*ww**iq*q*kqw**rsrwlqrysr
s*rw*qiqq*qqrrrl*qrwlww*s*ww**rkksirwfpkklr*qqk*sskrrt*tirik
s*lc**lekpi*rcih*ciqqtkktsiq*qq*akkl*q**qlskt*qqrtt*stklnqfn
nfqhfkkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH524 (SLH524Q) /CSM/SL/SLH5-A/SLH524Q.Seq.d/                       1088   0.0
SLC539 (SLC539Q) /CSM/SL/SLC5-B/SLC539Q.Seq.d/                       1088   0.0
SLB822 (SLB822Q) /CSM/SL/SLB8-A/SLB822Q.Seq.d/                       1088   0.0
SLB645 (SLB645Q) /CSM/SL/SLB6-B/SLB645Q.Seq.d/                       1088   0.0
SLB271 (SLB271Q) /CSM/SL/SLB2-C/SLB271Q.Seq.d/                       1088   0.0
SLA604 (SLA604Q) /CSM/SL/SLA6-A/SLA604Q.Seq.d/                       1088   0.0
SLA234 (SLA234Q) /CSM/SL/SLA2-B/SLA234Q.Seq.d/                       1088   0.0
VFE701 (VFE701Q) /CSM/VF/VFE7-A/VFE701Q.Seq.d/                       1074   0.0
AFG312 (AFG312Q) /CSM/AF/AFG3-A/AFG312Q.Seq.d/                       1066   0.0
VFD141 (VFD141Q) /CSM/VF/VFD1-B/VFD141Q.Seq.d/                       1055   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039498) Dictyostelium discoideum slug cDNA, clone SLA604.     1088   0.0    1
(AU039310) Dictyostelium discoideum slug cDNA, clone SLH524.     1088   0.0    1
(AU034298) Dictyostelium discoideum slug cDNA, clone SLC539.     1088   0.0    1
(AU034028) Dictyostelium discoideum slug cDNA, clone SLB822.     1088   0.0    1
(AU033947) Dictyostelium discoideum slug cDNA, clone SLB645.     1088   0.0    1
(AU033652) Dictyostelium discoideum slug cDNA, clone SLB271.     1088   0.0    1
(C25541) Dictyostelium discoideum slug cDNA, clone SLA234.       1088   0.0    1
(BJ427902) Dictyostelium discoideum cDNA clone:ddv10b01, 3' ...  1074   0.0    1
(BJ342248) Dictyostelium discoideum cDNA clone:dda13h03, 3' ...  1066   0.0    1
(AU034221) Dictyostelium discoideum slug cDNA, clone SLC276.     1045   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF332093_94(AF332093|pid:none) White spot syndrome virus, comple...    35   1.0
protein update 2009. 1.22
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.16  top: 0.47  tms: 0.13  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: plasma membrane
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: extracellular, including cell wall

>> prediction for SLC539 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC539Z
3' end seq. 
>SLC539Z.Seq
----------TGATAGATACAACAACAACCGTGACAACGATAGAAAAGACGATCGTTTCA
GCAATGGTGTTTCCCCATTCAACTTCAAGAATAACAATAACCGTGATCGTGATGGTGGTG
ATAGATACAATAACAATAGAAACAGTGGTGATAGAGATCAAGGTGGTTACAGAGGTACTC
AAGATCGTGAAGGTGGTGACAGATACAACAATAACAACAGAGACGGCGGTTATAACAGAG
GTGGTTATGGTGGTAATCGTGATGGTGGTGATAGAGAAAGAAATCCATTCGGTGGTTCCC
CAAGAAACTACGATAACAACAGAAATGATCGTCCAAGAGAAGAACGTAGACCATTCGTAT
CAAAAGTTGACTCTGTTGATGATTGGAGAAACCCATCTGAAGATGTATCCACTAATGCAT
TCAACAAACAAAGAAAACCAGCATTCAATAACAACAATGAGCAAAGAAGTTATAACAATA
ATAACAACTATCAAAGACGTGACAACAACGAACAACATGATCAACAAAACTAAATCAATT
TAATAATTTCCAACATTTTAAAAAAACAAC
Length of 3' end seq. 560
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -