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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC533
Library SL
(Link to library)
Clone ID SLC533
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15578-1
Original site URL
Representative seq. ID SLC533P
(Link to Original site)
Representative DNA sequence 
>SLC533 (SLC533Q) /CSM/SL/SLC5-B/SLC533Q.Seq.d/
GGTTTTTTTATTTTTTTTTTTTTTTTTTTAAAAAAATATATTTCATAAAAATTCAAAAAT
AACTCAAGAGAAGAGAATAAAATTTCAAATATTTAAATAACTTTAACAGAAATCAAAAAA
AAAGTAATTGTAAAAAGAGTAGTATCAATATAGAATATAAATAAAAACAAAATGCAAAGA
TCAAAACAAGAAACTAGAAAATCACAATATAAAAAGTCAATTGATTCAGATGAGTCACGT
AGAAAGAGAGAAGAAGCTTCACTCTCTATTAGAAAGAATAAAAGAGAAGAAAGTTTATTA
AAAAAGAGAACTCAAGCAGTCCCAGGTTCTACTCCAGTTAAAGTTGATTCTTTAATTAAC
CAAAGATTGGAACAACTCCCATCTTTAGTTGCAGAAATTAATTCAGAAAACCCAGATTTA
ATTTTAAAATCAACTACAGCATTTAGAAAATTACTTTCAATTGAAAAATCCCCACCAATT
GAAGAAGTTATTAAAACTGGTATTGTCCCAAGACTCGTTAAATTTTCATATATGCCAGAT
TTCCCACAACTTCAATTTGAAGCAGCATGGGCATTAACAAATATTGCATCAGGTACACCA
GAACAAACTAGAGTTGTAATTGXXXXXXXXXXATCTCTTGAACCTCTTACAATCACCAAA
GAGAGCCATTCGTAAAGAAGCCTGTTGGACCATCTCCAATATTACTGCAGGTGATAAAAA
TCAAATTCAACAAGTCATCGATGCCAATATCATTCCATCACTCGTTTATCTCTTGGCAAA
TGCTGAATTTGAAATTCAAAAAGAAGCCGCTTGGGCCATCAGTAACGCTACCTCTTGTGG
TACCCCTCAACAAATTCATTTCCTCGTTAGCCAAGGTTGTGTCAAACCATTATGTGATCT
CCTCAAGGTTTCAGATCCACGTATTATCAATGTTGCACTCGAAGGTATTGAAAATATTTT
AGTTGCTGGTAAAAAAGAAGCTCAAGTCACTGGTGTCAATCCATACAAAAAGATCATCGA
AGATGCTGATGGTCTTGGTAAAATCTATGATTTACAACATCATATGAACAAAGATACCTT
TGAAAAAGTTTCAAGAATTATCTCTACTTATTTGGAAGATGAACAAGAAGATGAAGGTGA
TCTCATGCCAGAAGGTTCTTCTTTCTCCTTTTCAAATCAAACAAATTCCAATTTTAACCT
TT
sequence update 1999. 1.13
Translated Amino Acid sequence 
gffiffffflkkyis*kfknnsreenkisni*itlteikkkvivkrvvsi*NINKNKMQR
SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN
QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFSYMPD
FPQLQFEAAWALTNIASGTPEQTRVVI---

---LLNLLQSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKE
AAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQ
VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTYLEDEQEDEGDLMPEGSSF
SFSNQTNSNFNL
Translated Amino Acid sequence (All Frames) 
Frame A:
gffiffffflkkyis*kfknnsreenkisni*itlteikkkvivkrvvsi*NINKNKMQR
SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN
QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFSYMPD
FPQLQFEAAWALTNIASGTPEQTRVVI---

---is*tsynhqrepfvkkpvgpspillqvikikfnkssmpisfhhsfiswqmlnlkfkk
kplgpsvtlplvvplnkfisslakvvsnhyvissrfqihvlsmlhskvlkif*llvkkkl
kslvsihtkrsskmlmvlvksmiynii*tkiplkkfqelslliwkmnkkmkviscqkvll
spfqikqipiltf

Frame B:
vflffffff*knifhknskitqekrikfqifk*l*qkskkk*l*ke*yqyri*iktkckd
qnkklenhniksqliqmshverekklhsllerikekkvy*krelkqsqvllqlklil*lt
kdwnnshl*lqkliqktqi*f*nqlqhlenyfqlknphqlkkllklvlsqdslnfhicqi
shnfnlkqhgh*qilhqvhqnklel*l---

---slepltitkeshs*rslldhlqyycr**ksnstshrcqyhsitrlslgkc*i*nskr
srlghq*ryllwypstnsfpr*prlcqtim*spqgfrstyyqcctrry*kyfscw*krss
shwcqsiqkdhrrc*wsw*nl*fttsyeqryl*ksfknylylfgr*trr*r*sharrfff
llfksnkfqf*p

Frame C:
ffyffffffkkiyfikiqk*lkrre*nfkylnnfnrnqkksnckkssinieyk*kqnaki
ktrn*kiti*kvn*fr*vt*kerrsftly*ke*krrkfikkensssprfyss*s*ffn*p
kigttpifscrn*frkprfnfkinysi*kitfn*kiptn*rsy*nwycpktr*ifiyarf
pttsi*ssmginkycirytrtn*scn---

---LLNLLQSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKE
AAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQ
VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTYLEDEQEDEGDLMPEGSSF
SFSNQTNSNFNL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC533 (SLC533Q) /CSM/SL/SLC5-B/SLC533Q.Seq.d/                       1897   0.0
AFN276 (AFN276Q) /CSM/AF/AFN2-D/AFN276Q.Seq.d/                       1124   0.0
AFK832 (AFK832Q) /CSM/AF/AFK8-B/AFK832Q.Seq.d/                       1116   0.0
AFL634 (AFL634Q) /CSM/AF/AFL6-B/AFL634Q.Seq.d/                       1108   0.0
CHI254 (CHI254Q) /CSM/CH/CHI2-C/CHI254Q.Seq.d/                        791   0.0
SLK645 (SLK645Q) /CSM/SL/SLK6-B/SLK645Q.Seq.d/                        783   0.0
CFE472 (CFE472Q) /CSM/CF/CFE4-C/CFE472Q.Seq.d/                        714   0.0
AFF204 (AFF204Q) /CSM/AF/AFF2-A/AFF204Q.Seq.d/                        670   0.0
SFK303 (SFK303Q) /CSM/SF/SFK3-A/SFK303Q.Seq.d/                        603   e-171
CHI452 (CHI452Q) /CSM/CH/CHI4-C/CHI452Q.Seq.d/                        190   3e-47
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...  1130   0.0    1
(AU034294) Dictyostelium discoideum slug cDNA, clone SLC533.     1130   0.0    1
(BJ347676) Dictyostelium discoideum cDNA clone:dda27g20, 3' ...  1124   0.0    1
(BJ343242) Dictyostelium discoideum cDNA clone:dda22p08, 3' ...  1116   0.0    1
(BJ346539) Dictyostelium discoideum cDNA clone:dda24c10, 3' ...  1009   0.0    2
(AU060989) Dictyostelium discoideum slug cDNA, clone SLC533.      617   0.0    3
(BJ339950) Dictyostelium discoideum cDNA clone:dda11g02, 3' ...   644   e-180  1
(BJ366340) Dictyostelium discoideum cDNA clone:ddc38k14, 5' ...   601   e-176  3
(AU060618) Dictyostelium discoideum slug cDNA, clone SLK645.      593   e-174  3
(BJ330234) Dictyostelium discoideum cDNA clone:dda27g20, 5' ...   601   e-174  2
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76P29) RecName: Full=Importin subunit alpha-B; AltName: Full=K...   348   2e-94
U69533_1(U69533|pid:none) Arabidopsis thaliana AtKAP alpha mRNA,...   195   1e-52
AY054164_1(AY054164|pid:none) Arabidopsis thaliana AT3g06720/F3E...   195   2e-52
(Q96321) RecName: Full=Importin subunit alpha-1; AltName: Full=K...   195   2e-52
T52102(T52102) probable nuclear transport factor importin alpha-...   195   2e-52
EF144903_1(EF144903|pid:none) Populus trichocarpa clone WS01119_...   186   3e-51
A86157(A86157) probable importin alpha subunit [imported] - Arab...   184   3e-50
AM432887_1(AM432887|pid:none) Vitis vinifera contig VV78X186549....   200   9e-50
Y09511_1(Y09511|pid:none) A.thaliana mRNA for Kap alpha protein.      187   1e-49
(O04294) RecName: Full=Importin subunit alpha-2; AltName: Full=K...   187   1e-49
protein update 2009. 6. 2
PSORT 

 psg: 0.38  gvh: 0.32  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.03
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLC533 is nuc
5' end seq. ID SLC533F
5' end seq. 
>SLC533F.Seq
GGTTTTTTTATTTTTTTTTTTTTTTTTTTAAAAAAATATATTTCATAAAAATTCAAAAAT
AACTCAAGAGAAGAGAATAAAATTTCAAATATTTAAATAACTTTAACAGAAATCAAAAAA
AAAGTAATTGTAAAAAGAGTAGTATCAATATAGAATATAAATAAAAACAAAATGCAAAGA
TCAAAACAAGAAACTAGAAAATCACAATATAAAAAGTCAATTGATTCAGATGAGTCACGT
AGAAAGAGAGAAGAAGCTTCACTCTCTATTAGAAAGAATAAAAGAGAAGAAAGTTTATTA
AAAAAGAGAACTCAAGCAGTCCCAGGTTCTACTCCAGTTAAAGTTGATTCTTTAATTAAC
CAAAGATTGGAACAACTCCCATCTTTAGTTGCAGAAATTAATTCAGAAAACCCAGATTTA
ATTTTAAAATCAACTACAGCATTTAGAAAATTACTTTCAATTGAAAAATCCCCACCAATT
GAAGAAGTTATTAAAACTGGTATTGTCCCAAGACTCGTTAAATTTTCATATATGCCAGAT
TTCCCACAACTTCAATTTGAAGCAGCATGGGCATTAACAAATATTGCATCAGGTACACCA
GAACAAACTAGAGTTGTAATTG----------
Length of 5' end seq. 622
3' end seq. ID SLC533Z
3' end seq. 
>SLC533Z.Seq
----------ATCTCTTGAACCTCTTACAATCACCAAAGAGAGCCATTCGTAAAGAAGCC
TGTTGGACCATCTCCAATATTACTGCAGGTGATAAAAATCAAATTCAACAAGTCATCGAT
GCCAATATCATTCCATCACTCGTTTATCTCTTGGCAAATGCTGAATTTGAAATTCAAAAA
GAAGCCGCTTGGGCCATCAGTAACGCTACCTCTTGTGGTACCCCTCAACAAATTCATTTC
CTCGTTAGCCAAGGTTGTGTCAAACCATTATGTGATCTCCTCAAGGTTTCAGATCCACGT
ATTATCAATGTTGCACTCGAAGGTATTGAAAATATTTTAGTTGCTGGTAAAAAAGAAGCT
CAAGTCACTGGTGTCAATCCATACAAAAAGATCATCGAAGATGCTGATGGTCTTGGTAAA
ATCTATGATTTACAACATCATATGAACAAAGATACCTTTGAAAAAGTTTCAAGAATTATC
TCTACTTATTTGGAAGATGAACAAGAAGATGAAGGTGATCTCATGCCAGAAGGTTCTTCT
TTCTCCTTTTCAAATCAAACAAATTCCAATTTTAACCTTT
Length of 3' end seq. 570
Connected seq. ID SLC533P
Connected seq. 
>SLC533P.Seq
GGTTTTTTTATTTTTTTTTTTTTTTTTTTAAAAAAATATATTTCATAAAAATTCAAAAAT
AACTCAAGAGAAGAGAATAAAATTTCAAATATTTAAATAACTTTAACAGAAATCAAAAAA
AAAGTAATTGTAAAAAGAGTAGTATCAATATAGAATATAAATAAAAACAAAATGCAAAGA
TCAAAACAAGAAACTAGAAAATCACAATATAAAAAGTCAATTGATTCAGATGAGTCACGT
AGAAAGAGAGAAGAAGCTTCACTCTCTATTAGAAAGAATAAAAGAGAAGAAAGTTTATTA
AAAAAGAGAACTCAAGCAGTCCCAGGTTCTACTCCAGTTAAAGTTGATTCTTTAATTAAC
CAAAGATTGGAACAACTCCCATCTTTAGTTGCAGAAATTAATTCAGAAAACCCAGATTTA
ATTTTAAAATCAACTACAGCATTTAGAAAATTACTTTCAATTGAAAAATCCCCACCAATT
GAAGAAGTTATTAAAACTGGTATTGTCCCAAGACTCGTTAAATTTTCATATATGCCAGAT
TTCCCACAACTTCAATTTGAAGCAGCATGGGCATTAACAAATATTGCATCAGGTACACCA
GAACAAACTAGAGTTGTAATTG----------ATCTCTTGAACCTCTTACAATCACCAAA
GAGAGCCATTCGTAAAGAAGCCTGTTGGACCATCTCCAATATTACTGCAGGTGATAAAAA
TCAAATTCAACAAGTCATCGATGCCAATATCATTCCATCACTCGTTTATCTCTTGGCAAA
TGCTGAATTTGAAATTCAAAAAGAAGCCGCTTGGGCCATCAGTAACGCTACCTCTTGTGG
TACCCCTCAACAAATTCATTTCCTCGTTAGCCAAGGTTGTGTCAAACCATTATGTGATCT
CCTCAAGGTTTCAGATCCACGTATTATCAATGTTGCACTCGAAGGTATTGAAAATATTTT
AGTTGCTGGTAAAAAAGAAGCTCAAGTCACTGGTGTCAATCCATACAAAAAGATCATCGA
AGATGCTGATGGTCTTGGTAAAATCTATGATTTACAACATCATATGAACAAAGATACCTT
TGAAAAAGTTTCAAGAATTATCTCTACTTATTTGGAAGATGAACAAGAAGATGAAGGTGA
TCTCATGCCAGAAGGTTCTTCTTTCTCCTTTTCAAATCAAACAAATTCCAATTTTAACCT
TT
Length of connected seq. 1192
Full length Seq ID -
Full length Seq. -
Length of full length seq. -