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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC529
Library SL
(Link to library)
Clone ID SLC529
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID SLC529E
(Link to Original site)
Representative DNA sequence 
>SLC529 (SLC529Q) /CSM/SL/SLC5-B/SLC529Q.Seq.d/
CCAAATTTTAATTATTAATATTTTTTTTTTTTAAATAAAAATATATAAATATATAANNNT
NNNATAAAGTTTATTTATGGACTTTTAGCTCTTGCAGCTTCAATTGTAGCAACGAATGCT
CAATATTGTTCTATTGGTGTTTGTCTAAAAGAAGGTGAAAATTGTAACATANCTAANNNT
AATTTTACAGATAATAGTGTAGTTGATATTACATGTGAATATGGTACTTTTTGTCCATCT
AGTTCAGTAATCTTTACCCCAGTTTGTACTAAATTAAGTGGTTTAGGAGAAACTTGTGGC
ACCCCATTCACAGAATGTGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGT
AATTTACAAACTTGTGCTATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGAC
TACCAATGTGGTAATGGTTTAACATGTAATGNNGAGATTTGCTCATTGAAACCACACGTT
ATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGTACTAACTCATTA
AATACTCCAGTCCAATGTAGAACACTTTATGCTACCGGTGCAAAATGTACTAGAGACGGT
CAATGCCCATACAACAACTATTGTGGTGCCAAACAAGGTGATAACTCTGGTGATTTATTC
TGTCAATCAAATTTCAACAAAGTCCAAGGTGACACTTGTTCAGTCCACGGTTCTTCATTT
GTTCAATTAGGTTCTGGTTTCCGTTACGAATGTGCTGCTACTTTAGTTTGCCAAGCTGGT
ACCTGTCAATCTCCACAAAACTCAATCCCAACTGGTGATTGTATGGATATCGCCAACTCT
TGTCCATCAGCATATGGTTCAAGTTGCCAATGTACTTCTACCTCACAAATTATAACTGGT
AAATGCACTGCTAGTCCATTCAACTTGGCTTCAAATTGTCAAACCTCTGTCCAAAACTTG
GCCACATGTGCTATTGAACATGAATGTCCAAGCATTGAAAATATCGAATTAGGTCCAGAT
TCATGTCTCATGAAACACTGTAGATCTGAAATCTGTGATAACAATAATTGTATTGTTCAA
ACAAACACTTGTGGTGATGCACCAGTTTACCCAGTTTGTAACACCCCATCATCTTCATCT
GTTATTTTGCCATCATTTGTCTTATTAATTGTTGCCATTATTGCTTTATTATTCTAAAAA
TTTTATTAAAAACAAAATAAAATTATTTAAAAAATCGAATTTTTTTTTTTAAAAAAAAA
sequence update 1999. 7.13
Translated Amino Acid sequence 
pnfny*yffflnkni*IYXXXIKFIYGLLALAASIVATNAQYCSIGVCLKEGENCNIXXX
NFTDNSVVDITCEYGTFCPSSSVIFTPVCTKLSGLGETCGTPFTECAEPFACRSVTTTKG
NLQTCAMPDYLGFGESCNSDYQCGNGLTCNXEICSLKPHVICSNDGQCPFGQFCNGTNSL
NTPVQCRTLYATGAKCTRDGQCPYNNYCGAKQGDNSGDLFCQSNFNKVQGDTCSVHGSSF
VQLGSGFRYECAATLVCQAGTCQSPQNSIPTGDCMDIANSCPSAYGSSCQCTSTSQIITG
KCTASPFNLASNCQTSVQNLATCAIEHECPSIENIELGPDSCLMKHCRSEICDNNNCIVQ
TNTCGDAPVYPVCNTPSSSSVILPSFVLLIVAIIALLF*kfy*kqnkii*kieffflkk
Translated Amino Acid sequence (All Frames) 
Frame A:
pnfny*yffflnkni*IYXXXIKFIYGLLALAASIVATNAQYCSIGVCLKEGENCNIXXX
NFTDNSVVDITCEYGTFCPSSSVIFTPVCTKLSGLGETCGTPFTECAEPFACRSVTTTKG
NLQTCAMPDYLGFGESCNSDYQCGNGLTCNXEICSLKPHVICSNDGQCPFGQFCNGTNSL
NTPVQCRTLYATGAKCTRDGQCPYNNYCGAKQGDNSGDLFCQSNFNKVQGDTCSVHGSSF
VQLGSGFRYECAATLVCQAGTCQSPQNSIPTGDCMDIANSCPSAYGSSCQCTSTSQIITG
KCTASPFNLASNCQTSVQNLATCAIEHECPSIENIELGPDSCLMKHCRSEICDNNNCIVQ
TNTCGDAPVYPVCNTPSSSSVILPSFVLLIVAIIALLF*kfy*kqnkii*kieffflkk


Frame B:
qiliinifff*ikiykyixxx*slfmdf*llqlql*qrmlnivllvfv*kkvkivtxlxx
ilqiiv*lilhvnmvlfvhlvq*slpqfvln*vv*eklvaphsqnvqnhshvvllqppkv
iyklvlcqii*vlvkvviqttnvvmv*hvmxrfah*nhtlfvltmvnvhlvnsvmvlth*
ilqsnvehfmlpvqnvletvnahtttivvpnkvitlviysvnqistkskvtlvqstvlhl
fn*vlvsvtnvlll*faklvpvnlhktqsqlvivwisptlvhqhmvqvanvllphkl*lv
nallvhstwlqivkplsktwphvllnmnvqalkisn*vqihvs*ntvdlksvitiivlfk
qtlvvmhqftqfvtphhlhllfchhlsy*llplllyysknfiknkiklfkksnfff*kk


Frame C:
kf*lliffffk*kyini*xxxkvylwtfsscsfncsnecsilfywclskrr*kl*hx*x*
fyr**cs*yym*iwyflsi*fsnlypsly*ikwfrrnlwhpihrmcrtirmsfcynhqr*
ftnlcyarlfrfw*kl*frlpmw*wfnm*xxdlliettrylf*rwsmsiwsil*wy*lik
ysspm*ntlcyrckmy*rrsmpiqqllwcqtr**lw*filsikfqqspr*hlfsprffic
sirfwfplrmccyfslpswylsistklnpnw*lygyrqllsisiwfklpmyfyltnynw*
mhc*siqlgfklsnlcpklghmcy*t*mskh*kyrirsrfmshetl*i*nl**q*lycsn
khlw*ctslpsl*hpiificyfaiiclincchycfiilkillktk*nylknrifffkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC529 (SLC529Q) /CSM/SL/SLC5-B/SLC529Q.Seq.d/                       2206   0.0
FC-BI21 (FC-BI21Q) /CSM/FC/FC-BI/FC-BI21Q.Seq.d/                     1865   0.0
VFI776 (VFI776Q) /CSM/VF/VFI7-D/VFI776Q.Seq.d/                       1235   0.0
SFC278 (SFC278Q) /CSM/SF/SFC2-D/SFC278Q.Seq.d/                       1124   0.0
SFE226 (SFE226Q) /CSM/SF/SFE2-B/SFE226Q.Seq.d/                       1094   0.0
VFM235 (VFM235Q) /CSM/VF/VFM2-B/VFM235Q.Seq.d/                       1049   0.0
VFI528 (VFI528Q) /CSM/VF/VFI5-B/VFI528Q.Seq.d/                       1039   0.0
SLB206 (SLB206Q) /CSM/SL/SLB2-A/SLB206Q.Seq.d/                        684   0.0
FC-IC1493 (FC-IC1493Q) /CSM/FC-IC/FC-IC1493Q.Seq.d/                   636   0.0
FC-IC1419 (FC-IC1419Q) /CSM/FC-IC/FC-IC1419Q.Seq.d/                   636   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB079253) Dictyostelium discoideum Dd-gdcA mRNA, complete cds.  2111   0.0    1
(AB079606) Dictyostelium discoideum Dd-gdcA gene, complete cds.  1935   0.0    1
(AU060988) Dictyostelium discoideum slug cDNA, clone SLC529.     1308   0.0    1
(AU284729) Dictyostelium discoideum gamete cDNA clone:FC-BI2...  1233   0.0    4
(BJ432488) Dictyostelium discoideum cDNA clone:ddv18h19, 3' ...  1170   0.0    1
(BJ399415) Dictyostelium discoideum cDNA clone:dds5k20, 3' e...  1070   0.0    1
(BJ416202) Dictyostelium discoideum cDNA clone:ddv25e10, 5' ...  1049   0.0    1
(BJ400213) Dictyostelium discoideum cDNA clone:dds9c08, 3' e...  1035   0.0    1
(BJ432311) Dictyostelium discoideum cDNA clone:ddv18g07, 3' ...   973   0.0    1
(AU034291) Dictyostelium discoideum slug cDNA, clone SLC529.      874   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m...   772   0.0
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64;      ...    80   2e-13
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot...    66   2e-09
AC115607_13(AC115607|pid:none) Dictyostelium discoideum chromoso...    65   7e-09
AC116977_110(AC116977|pid:none) Dictyostelium discoideum chromos...    63   2e-08
AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso...    58   8e-07
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    56   2e-06
AM502222_18(AM502222|pid:none) Leishmania infantum chromosome 4.       56   3e-06
CP001131_2828(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    55   5e-06
S18188(S18188)notch protein homolog - rat                              54   1e-05
protein update 2009. 7. 4
PSORT 

 psg: 0.93  gvh: 0.73  alm: 0.11  top: 0.27  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SLC529 is pla
5' end seq. ID SLC529F
5' end seq. 
>SLC529F.Seq
CCAAATTTTAATTATTAATATTTTTTTTTTTTAAATAAAAATATATAAATATATAANNNT
NNNATAAAGTTTATTTATGGACTTTTAGCTCTTGCAGCTTCAATTGTAGCAACGAATGCT
CAATATTGTTCTATTGGTGTTTGTCTAAAAGAAGGTGAAAATTGTAACATANCTAANNNT
AATTTTACAGATAATAGTGTAGTTGATATTACATGTGAATATGGTACTTTTTGTCCATCT
AGTTCAGTAATCTTTACCCCAGTTTGTACTAAATTAAGTGGTTTAGGAGAAACTTGTGGC
ACCCCATTCACAGAATGTGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGT
AATTTACAAACTTGTGCTATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGAC
TACCAATGTGGTAATGGTTTAACATGTAATGNNGAGATTTGCTCATTGAAACCACACGTT
ATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGTACTAACTCATTA
AATACTCCAGTCCAATGTAGAACACTTTATGCTACCGGTGCAAAATGTACTAGAGACGGT
CAATGCCCATACAACAACTATTGTGGTGCCAAACAAGGTGATAACTCTGGTGATTTATTC
TGTCAATCAAATTTCAACAAAGTCCAAGGTGACACTTGTTCAGTCCACGGTTCTTCATTT
GTTCAATTAGGTTCTGGTTTC----------
Length of 5' end seq. 741
3' end seq. ID SLC529Z
3' end seq. 
>SLC529Z.Seq
----------GTTCAATTAGGTTCTGGTTTCCGTTACGAATGTGCTGCTACTTTAGTTTG
CCAAGCTGGTACCTGTCAATCTCCACAAAACTCAATCCCAACTGGTGATTGTATGGATAT
CGCCAACTCTTGTCCATCAGCATATGGTTCAAGTTGCCAATGTACTTCTACCTCACAAAT
TATAACTGGTAAATGCACTGCTAGTCCATTCAACTTGGCTTCAAATTGTCAAACCTCTGT
CCAAAACTTGGCCACATGTGCTATTGAACATGAATGTCCAAGCATTGAAAATATCGAATT
AGGTCCAGATTCATGTCTCATGAAACACTGTAGATCTGAAATCTGTGATAACAATAATTG
TATTGTTCAAACAAACACTTGTGGTGATGCACCAGTTTACCCAGTTTGTAACACCCCATC
ATCTTCATCTGTTATTTTGCCATCATTTGTCTTATTAATTGTTGCCATTATTGCTTTATT
ATTCTAAAAATTTTATTAAAAACAAAATAAAATTATTTAAAAAATCGAATTTTTTTTTTT
AAAAAAAAA
Length of 3' end seq. 539
Connected seq. ID SLC529P
Connected seq. 
>SLC529P.Seq
CCAAATTTTAATTATTAATATTTTTTTTTTTTAAATAAAAATATATAAATATATAANNNT
NNNATAAAGTTTATTTATGGACTTTTAGCTCTTGCAGCTTCAATTGTAGCAACGAATGCT
CAATATTGTTCTATTGGTGTTTGTCTAAAAGAAGGTGAAAATTGTAACATANCTAANNNT
AATTTTACAGATAATAGTGTAGTTGATATTACATGTGAATATGGTACTTTTTGTCCATCT
AGTTCAGTAATCTTTACCCCAGTTTGTACTAAATTAAGTGGTTTAGGAGAAACTTGTGGC
ACCCCATTCACAGAATGTGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGT
AATTTACAAACTTGTGCTATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGAC
TACCAATGTGGTAATGGTTTAACATGTAATGNNGAGATTTGCTCATTGAAACCACACGTT
ATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGTACTAACTCATTA
AATACTCCAGTCCAATGTAGAACACTTTATGCTACCGGTGCAAAATGTACTAGAGACGGT
CAATGCCCATACAACAACTATTGTGGTGCCAAACAAGGTGATAACTCTGGTGATTTATTC
TGTCAATCAAATTTCAACAAAGTCCAAGGTGACACTTGTTCAGTCCACGGTTCTTCATTT
GTTCAATTAGGTTCTGGTTTC----------GTTCAATTAGGTTCTGGTTTCCGTTACGA
ATGTGCTGCTACTTTAGTTTGCCAAGCTGGTACCTGTCAATCTCCACAAAACTCAATCCC
AACTGGTGATTGTATGGATATCGCCAACTCTTGTCCATCAGCATATGGTTCAAGTTGCCA
ATGTACTTCTACCTCACAAATTATAACTGGTAAATGCACTGCTAGTCCATTCAACTTGGC
TTCAAATTGTCAAACCTCTGTCCAAAACTTGGCCACATGTGCTATTGAACATGAATGTCC
AAGCATTGAAAATATCGAATTAGGTCCAGATTCATGTCTCATGAAACACTGTAGATCTGA
AATCTGTGATAACAATAATTGTATTGTTCAAACAAACACTTGTGGTGATGCACCAGTTTA
CCCAGTTTGTAACACCCCATCATCTTCATCTGTTATTTTGCCATCATTTGTCTTATTAAT
TGTTGCCATTATTGCTTTATTATTCTAAAAATTTTATTAAAAACAAAATAAAATTATTTA
AAAAATCGAATTTTTTTTTTTAAAAAAAAA
Length of connected seq. 1280
Full length Seq ID SLC529E
Full length Seq. 
>SLC529E.Seq
CCAAATTTTAATTATTAATATTTTTTTTTTTTAAATAAAAATATATAAATATATAANNNT
NNNATAAAGTTTATTTATGGACTTTTAGCTCTTGCAGCTTCAATTGTAGCAACGAATGCT
CAATATTGTTCTATTGGTGTTTGTCTAAAAGAAGGTGAAAATTGTAACATANCTAANNNT
AATTTTACAGATAATAGTGTAGTTGATATTACATGTGAATATGGTACTTTTTGTCCATCT
AGTTCAGTAATCTTTACCCCAGTTTGTACTAAATTAAGTGGTTTAGGAGAAACTTGTGGC
ACCCCATTCACAGAATGTGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGT
AATTTACAAACTTGTGCTATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGAC
TACCAATGTGGTAATGGTTTAACATGTAATGNNGAGATTTGCTCATTGAAACCACACGTT
ATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGTACTAACTCATTA
AATACTCCAGTCCAATGTAGAACACTTTATGCTACCGGTGCAAAATGTACTAGAGACGGT
CAATGCCCATACAACAACTATTGTGGTGCCAAACAAGGTGATAACTCTGGTGATTTATTC
TGTCAATCAAATTTCAACAAAGTCCAAGGTGACACTTGTTCAGTCCACGGTTCTTCATTT
GTTCAATTAGGTTCTGGTTTCCGTTACGAATGTGCTGCTACTTTAGTTTGCCAAGCTGGT
ACCTGTCAATCTCCACAAAACTCAATCCCAACTGGTGATTGTATGGATATCGCCAACTCT
TGTCCATCAGCATATGGTTCAAGTTGCCAATGTACTTCTACCTCACAAATTATAACTGGT
AAATGCACTGCTAGTCCATTCAACTTGGCTTCAAATTGTCAAACCTCTGTCCAAAACTTG
GCCACATGTGCTATTGAACATGAATGTCCAAGCATTGAAAATATCGAATTAGGTCCAGAT
TCATGTCTCATGAAACACTGTAGATCTGAAATCTGTGATAACAATAATTGTATTGTTCAA
ACAAACACTTGTGGTGATGCACCAGTTTACCCAGTTTGTAACACCCCATCATCTTCATCT
GTTATTTTGCCATCATTTGTCTTATTAATTGTTGCCATTATTGCTTTATTATTCTAAAAA
TTTTATTAAAAACAAAATAAAATTATTTAAAAAATCGAATTTTTTTTTTTAAAAAAAAA
Length of full length seq. 1259