SLC527
Library SL
(Link to library)
Clone ID SLC527
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15436-1
Original site URL
Representative seq. ID SLC527Z
(Link to Original site)
Representative DNA sequence
>SLC527 (SLC527Q) /CSM/SL/SLC5-B/SLC527Q.Seq.d/
XXXXXXXXXXTTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGATTCT
CACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGGGATA
TCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACACTGTCA
CCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTGTCTCT
GGGAATTATCATCTGGTAAACCATTATACAAATTAGAAGCTCGTAACACCATCAATGCTC
TTGCTTTCTCACCAAACAAATATTGGTTATCTGCTGCCACTGATGACAAAATCATCATTT
GGGATCTCCTCACCAAACAAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACAAGCTT
TCGACTCAAAGAAAAAGAAAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCTCGCTT
GGTCTGCTGATGGTTCAGTCTTATATGCTGGTTACAATGATGGTTTAATCCGTGTTTACA
AATCATCATCCCAATAAATTTTTTAATTAAAATTTCAAAAAAA
sequence update 1998. 5. 8
Translated Amino Acid sequence
---LEGPEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVT
ISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIW
DLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPACLSLAWSADGSVLYAGYNDGLIRVYK
SSSQ*if*lkfqk


Translated Amino Acid sequence (All Frames)
Frame A:
---LEGPEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVT
ISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIW
DLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPACLSLAWSADGSVLYAGYNDGLIRVYK
SSSQ*if*lkfqk


Frame B:
---*kvqklikigfhvsdshqtpqpsfqvhgitklrsgisrasnattp*ltipvtstlsp
slqtvhyvplvvkipllvsgnyhlvnhytn*klvtpsmlllshqtnigyllplmtkssfg
isspnkfslkssqksknklstqrkrknqnqkhqlvspslgllmvqsymlvtmmv*svftn
hhpnkffn*nfkk


Frame C:
---rrsrsssrlgfmyqiltkhpnhrfrfmg*qs*dlgyqelqmqphln*pyrlrqhchh
lsrrfimclww*rylclslgiiiw*tiiqirss*hhqcscfltkqilvicch**qnhhlg
sphqtssr*nrprsqrtsfrlkekeriktkstslslprlvc*wfslicwlq*wfnpclqi
iipinflikiskk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH295 (SLH295Q) /CSM/SL/SLH2-D/SLH295Q.Seq.d/ 1122 0.0
SLE327 (SLE327Q) /CSM/SL/SLE3-B/SLE327Q.Seq.d/ 1122 0.0
SLD484 (SLD484Q) /CSM/SL/SLD4-D/SLD484Q.Seq.d/ 1122 0.0
SLC745 (SLC745Q) /CSM/SL/SLC7-B/SLC745Q.Seq.d/ 1122 0.0
SLC527 (SLC527Q) /CSM/SL/SLC5-B/SLC527Q.Seq.d/ 1122 0.0
SLC187 (SLC187Q) /CSM/SL/SLC1-D/SLC187Q.Seq.d/ 1122 0.0
SLB104 (SLB104Q) /CSM/SL/SLB1-A/SLB104Q.Seq.d/ 1122 0.0
SLA422 (SLA422Q) /CSM/SL/SLA4-A/SLA422Q.Seq.d/ 1122 0.0
FCL-AD19 (FCL-AD19Q) /CSM/FCL/FCL-AD/FCL-AD19Q.Seq.d/ 1122 0.0
SLA452 (SLA452Q) /CSM/SL/SLA4-C/SLA452Q.Seq.d/ 1118 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1122 0.0 1
(AU052535) Dictyostelium discoideum slug cDNA, clone SLD484. 1122 0.0 1
(AU039259) Dictyostelium discoideum slug cDNA, clone SLH295. 1122 0.0 1
(AU034785) Dictyostelium discoideum slug cDNA, clone SLE327. 1122 0.0 1
(AU034471) Dictyostelium discoideum slug cDNA, clone SLC187. 1122 0.0 1
(AU034361) Dictyostelium discoideum slug cDNA, clone SLC745. 1122 0.0 1
(AU034289) Dictyostelium discoideum slug cDNA, clone SLC527. 1122 0.0 1
(AU033499) Dictyostelium discoideum slug cDNA, clone SLB104. 1122 0.0 1
(C25563) Dictyostelium discoideum slug cDNA, clone SLA422. 1122 0.0 1
(AU052258) Dictyostelium discoideum slug cDNA, clone SLA452. 1118 0.0 1
dna update 2009. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U27537_1(U27537|pid:none) Dictyostelium discoideum G beta like p... 316 2e-85
U77381_1(U77381|pid:none) Arabidopsis thaliana WD-40 repeat prot... 203 2e-51
EU906910_1(EU906910|pid:none) Phaseolus vulgaris Rack (RACK) mRN... 200 3e-50
(P49027) RecName: Full=Guanine nucleotide-binding protein subuni... 199 3e-50
EU952736_1(EU952736|pid:none) Zea mays clone 1287276 guanine nuc... 199 6e-50
BT055706_1(BT055706|pid:none) Zea mays full-length cDNA clone ZM... 199 6e-50
AC129717_13(AC129717|pid:none) Oryza sativa (japonica cultivar-g... 198 1e-49
(P49026) RecName: Full=Guanine nucleotide-binding protein subuni... 197 2e-49
AC073555_19(AC073555|pid:none) Arabidopsis thaliana chromosome 1... 196 3e-49
AB022686_1(AB022686|pid:none) Solanum lycopersicum mRNA for LeAr... 196 3e-49
protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.46 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLC527 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC527Z
3' end seq.
>SLC527Z.Seq
----------TTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGATTCT
CACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGGGATA
TCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACACTGTCA
CCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTGTCTCT
GGGAATTATCATCTGGTAAACCATTATACAAATTAGAAGCTCGTAACACCATCAATGCTC
TTGCTTTCTCACCAAACAAATATTGGTTATCTGCTGCCACTGATGACAAAATCATCATTT
GGGATCTCCTCACCAAACAAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACAAGCTT
TCGACTCAAAGAAAAAGAAAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCTCGCTT
GGTCTGCTGATGGTTCAGTCTTATATGCTGGTTACAATGATGGTTTAATCCGTGTTTACA
AATCATCATCCCAATAAATTTTTTAATTAAAATTTCAAAAAAA
Length of 3' end seq. 573
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -