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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC511
Library SL
(Link to library)
Clone ID SLC511
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SLC511E
(Link to Original site)
Representative DNA sequence 
>SLC511 (SLC511Q) /CSM/SL/SLC5-A/SLC511Q.Seq.d/
ACCACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATT
TTTTATCAAGTATCACTACAATAATAATTTTAATAATAATAGTATCAAAAAATGATATTA
AAAATCCCCTTTTTTTCTCTATAATTTTTAAATTAAATATAAAATAAATAAAAAAAAAAA
AAAATCTCCAAGTTTC
sequence update 1998. 5. 8
Translated Amino Acid sequence 
HSYNHSYNHSYLLNLIKKHFLSSITTIIILIIIVSKNDIKNPLFFSIIFKLNIK*ikkkk
nlqv
Translated Amino Acid sequence (All Frames) 
Frame A:
ttatttatttats*i*sknifyqvslq**f****yqkmilkipffsl*fln*i*nk*kkk
kiskf


Frame B:
pqlqpqlqpqlplkfnqktffikyhynnnfnnnsikk*y*kspfflynf*ikykinkkkk
kspsf


Frame C:
HSYNHSYNHSYLLNLIKKHFLSSITTIIILIIIVSKNDIKNPLFFSIIFKLNIK*ikkkk
nlqv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB820 (SSB820Q) /CSM/SS/SSB8-A/SSB820Q.Seq.d/                        293   5e-79
SLK894 (SLK894Q) /CSM/SL/SLK8-D/SLK894Q.Seq.d/                        293   5e-79
SLK302 (SLK302Q) /CSM/SL/SLK3-A/SLK302Q.Seq.d/                        293   5e-79
SLK165 (SLK165Q) /CSM/SL/SLK1-C/SLK165Q.Seq.d/                        293   5e-79
SLJ763 (SLJ763Q) /CSM/SL/SLJ7-C/SLJ763Q.Seq.d/                        293   5e-79
SLJ739 (SLJ739Q) /CSM/SL/SLJ7-B/SLJ739Q.Seq.d/                        293   5e-79
SLJ571 (SLJ571Q) /CSM/SL/SLJ5-C/SLJ571Q.Seq.d/                        293   5e-79
SLI565 (SLI565Q) /CSM/SL/SLI5-C/SLI565Q.Seq.d/                        293   5e-79
SLI557 (SLI557Q) /CSM/SL/SLI5-C/SLI557Q.Seq.d/                        293   5e-79
SLI431 (SLI431Q) /CSM/SL/SLI4-B/SLI431Q.Seq.d/                        293   5e-79
own update 2003. 6.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034577) Dictyostelium discoideum slug cDNA, clone SLC511.      210   3e-51  2
(AU053732) Dictyostelium discoideum slug cDNA, clone SLJ571.      210   3e-51  2
(AU035005) Dictyostelium discoideum slug cDNA, clone SLE476.      210   5e-51  2
(AU034483) Dictyostelium discoideum slug cDNA, clone SLC205.      210   5e-51  2
(AU040035) Dictyostelium discoideum slug cDNA, clone SLH495.      210   5e-51  2
(AU060899) Dictyostelium discoideum slug cDNA, clone SLC137.      210   7e-51  2
(AU036922) Dictyostelium discoideum slug cDNA, clone SSB820.      210   7e-51  2
(AU033469) Dictyostelium discoideum slug cDNA, clone SLA865.      210   8e-51  2
(AU033861) Dictyostelium discoideum slug cDNA, clone SLB532.      210   9e-51  2
(AU033402) Dictyostelium discoideum slug cDNA, clone SLA726.      210   1e-50  2
dna update 2009. 3. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 120,244,707
protein update 2009. 7. 4
PSORT 

 psg: 0.79  gvh: 0.35  alm: 0.24  top: 0.43  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.79  leu: 0.26  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLC511 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC511E
Full length Seq. 
>SLC511E.Seq
ACCACAGCTACAACCACAGCTACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATT
TTTTATCAAGTATCACTACAATAATAATTTTAATAATAATAGTATCAAAAAATGATATTA
AAAATCCCCTTTTTTTCTCTATAATTTTTAAATTAAATATAAAATAAATAAAAAAAAAAA
AAAATCTCCAAGTTTC
Length of full length seq. 196