SLC495
Library SL
(Link to library)
Clone ID SLC495
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03919-1
Original site URL
Representative seq. ID SLC495E
(Link to Original site)
Representative DNA sequence
>SLC495 (SLC495Q) /CSM/SL/SLC4-D/SLC495Q.Seq.d/
CAAATTCTTTGAAAAATTCTATTGATAATAATAATAACAATAATAATAATAATAATAATA
ATAATAATANTNGTGATACACCAGAAACACCAAAGAGAAAATTCTCTTTATCAATGGGTA
CTTTTAATAATAGTAAATCATCTCTTTCAACCTCAAATAGTAATATAAGTACACCCGATA
ATGGTGCTAGTAGTCCATTGGCAAGTTCCACTAGTGGTTCTGCTTCATCTGCTGCTGCTC
CCCCACCAGTTCCATTAACAAATTCAGCAAAAACTAAAATGAATTTCTTAAACTTTTAAA
AAAAACAAAAAAAAACAAAAAAAAAAACTAGGAAAAA
sequence update 1999. 7.13
Translated Amino Acid sequence
NSLKNSIDNNNNNNNNNNNNNNXXDTPETPKRKFSLSMGTFNNSKSSLSTSNSNISTPDN
GASSPLASSTSGSASSAAAPPPVPLTNSAKTKMNFLNF*kkqkktkkktrk


Translated Amino Acid sequence (All Frames)
Frame A:
qil*killiiiitiiiiiiiiiixvihqkhqrenslyqwvlliivnhlfqpqivi*vhpi
mvlvvhwqvplvvllhllllphqfh*qiqqklk*is*tfkknkkkqkkklgk


Frame B:
kffekfy*****q*********xx*ytrntkekilfingyf****iisfnlk**ykytr*
wc**sigkfh*wfcficccsptssinkfskn*neflkllkktkknkkkn*ek


Frame C:
NSLKNSIDNNNNNNNNNNNNNNXXDTPETPKRKFSLSMGTFNNSKSSLSTSNSNISTPDN
GASSPLASSTSGSASSAAAPPPVPLTNSAKTKMNFLNF*kkqkktkkktrk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC495 (SLC495Q) /CSM/SL/SLC4-D/SLC495Q.Seq.d/ 446 e-124
VSF494 (VSF494Q) /CSM/VS/VSF4-D/VSF494Q.Seq.d/ 383 e-105
VSG881 (VSG881Q) /CSM/VS/VSG8-D/VSG881Q.Seq.d/ 34 1.3
VSG382 (VSG382Q) /CSM/VS/VSG3-D/VSG382Q.Seq.d/ 34 1.3
VSD791 (VSD791Q) /CSM/VS/VSD7-D/VSD791Q.Seq.d/ 34 1.3
VSD650 (VSD650Q) /CSM/VS/VSD6-C/VSD650Q.Seq.d/ 34 1.3
VSD475 (VSD475Q) /CSM/VS/VSD4-D/VSD475Q.Seq.d/ 34 1.3
VSA292 (VSA292Q) /CSM/VS/VSA2-D/VSA292Q.Seq.d/ 34 1.3
VHO882 (VHO882Q) /CSM/VH/VHO8-D/VHO882Q.Seq.d/ 34 1.3
VHN290 (VHN290Q) /CSM/VH/VHN2-D/VHN290Q.Seq.d/ 34 1.3

own update 2003. 6.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU060981) Dictyostelium discoideum slug cDNA, clone SLC495. 446 e-128 2
(AU034572) Dictyostelium discoideum slug cDNA, clone SLC495. 446 e-121 1
(AU265324) Dictyostelium discoideum vegetative cDNA clone:VS... 285 5e-73 1
(AU265323) Dictyostelium discoideum vegetative cDNA clone:VS... 252 8e-70 2
(DY886122) CeleSEQ1651 Cunninghamella elegans pBluescript (E... 52 0.013 1
(AC135748) Rattus norvegicus clone CH230-92F3, *** SEQUENCIN... 44 3.2 1
(AC134197) Rattus norvegicus clone CH230-240C12, *** SEQUENC... 44 3.2 1
(AC128105) Rattus norvegicus clone CH230-423C23, *** SEQUENC... 44 3.2 1
(AC131898) Oryctolagus cuniculus clone LB1-83M7, WORKING DRA... 42 4.8 3
(AL732431) Human DNA sequence from clone XXyac-36GH4 on chro... 32 6.0 2
dna update 2009. 3. 3
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 252,858,536
protein update 2009. 7. 4
PSORT

psg: 0.46 gvh: 0.35 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.06
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLC495 is nuc

5' end seq. ID SLC495F
5' end seq.
>SLC495F.Seq
CAAATTCTTTGAAAAATTCTATTGATAATAATAATAACAATAATAATAATAATAATAATA
ATAATAATAATAGTGATACACCAGAAACACCAAAGAGAAAATTCTCTTTATCAATGGGTA
CTTTTAATAATAGTAAATCATCTCTTTCAACCTCAAATAGTAATATAAGTACACCCGATA
ATGGTGCTAGTAGTCCATTGGCAAGTTCCACTAGTGGTTCTGCTTCATCTGCTGCTGCTC
CCCCACCAGTTCCATTAACAAATTCAGCAAAAACTAAAATGAATTTCTTAAACTTTTAAA
AAAAACAAAAAAAAACAAAAAAAAAAACTAGGAAAAA
Length of 5' end seq. 337
3' end seq. ID SLC495Z
3' end seq.
>SLC495Z.Seq
----------ATAATAATAATAATAATAATAATAATAGTGGTGATACACCAGAAACACCA
AAGAGAAAATTCTCTTTATCAATGGGTACTTTTAATAATAGTAAATCATCTCTTTCAACC
TCAAATAGTAATATAAGTACACCCGATAATGGTGCTAGTAGTCCATTGGCAAGTTCCACT
AGTGGTTCTGCTTCATCTGCTGCTGCTCCCCCACCAGTTCCATTAACAAATTCAGCAAAA
ACTAAAATGAATTTCTTAAACTTTTAAAAAAAACAAAAAAAAACAAAAAAAAAAACTAGG
AAAAA
Length of 3' end seq. 295
Connected seq. ID SLC495P
Connected seq.
>SLC495P.Seq
CAAATTCTTTGAAAAATTCTATTGATAATAATAATAACAATAATAATAATAATAATAATA
ATAATAATAATAGTGATACACCAGAAACACCAAAGAGAAAATTCTCTTTATCAATGGGTA
CTTTTAATAATAGTAAATCATCTCTTTCAACCTCAAATAGTAATATAAGTACACCCGATA
ATGGTGCTAGTAGTCCATTGGCAAGTTCCACTAGTGGTTCTGCTTCATCTGCTGCTGCTC
CCCCACCAGTTCCATTAACAAATTCAGCAAAAACTAAAATGAATTTCTTAAACTTTTAAA
AAAAACAAAAAAAAACAAAAAAAAAAACTAGGAAAAA----------ATAATAATAATAA
TAATAATAATAATAGTGGTGATACACCAGAAACACCAAAGAGAAAATTCTCTTTATCAAT
GGGTACTTTTAATAATAGTAAATCATCTCTTTCAACCTCAAATAGTAATATAAGTACACC
CGATAATGGTGCTAGTAGTCCATTGGCAAGTTCCACTAGTGGTTCTGCTTCATCTGCTGC
TGCTCCCCCACCAGTTCCATTAACAAATTCAGCAAAAACTAAAATGAATTTCTTAAACTT
TTAAAAAAAACAAAAAAAAACAAAAAAAAAAACTAGGAAAAA
Length of connected seq. 632
Full length Seq ID SLC495E
Full length Seq.
>SLC495E.Seq
CAAATTCTTTGAAAAATTCTATTGATAATAATAATAACAATAATAATAATAATAATAATA
ATAATAATANTNGTGATACACCAGAAACACCAAAGAGAAAATTCTCTTTATCAATGGGTA
CTTTTAATAATAGTAAATCATCTCTTTCAACCTCAAATAGTAATATAAGTACACCCGATA
ATGGTGCTAGTAGTCCATTGGCAAGTTCCACTAGTGGTTCTGCTTCATCTGCTGCTGCTC
CCCCACCAGTTCCATTAACAAATTCAGCAAAAACTAAAATGAATTTCTTAAACTTTTAAA
AAAAACAAAAAAAAACAAAAAAAAAAACTAGGAAAAA
Length of full length seq. 337