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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC494
Library SL
(Link to library)
Clone ID SLC494
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID SLC494Z
(Link to Original site)
Representative DNA sequence 
>SLC494 (SLC494Q) /CSM/SL/SLC4-D/SLC494Q.Seq.d/
XXXXXXXXXXACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGC
CCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTAT
TGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATT
AGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACA
ATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGA
AGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAA
ATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCA
AATCTAAAAAAAATTTTAAAAAAAAAATAATAAAAAAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---ASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLE
SFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKF
HEKL*ti*val*vfkysnqi*kkf*kknnkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lppqls*nqst**kllpqktllvvftlysivvevlllvknvvsvphyslskliyqy*
npsvspliyvptlpvklshnvssiiglqlvlstkirkplksl*pperekv*pqksqiltn
stknskqfkshfefsnivikskknfkkkiikkk


Frame B:
---clpnslrtnllsrnycprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsir
ilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qi
prktlnnlsrtlsfqi**snlkkilkkk**kk


Frame C:
---ASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLE
SFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKF
HEKL*ti*val*vfkysnqi*kkf*kknnkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG546 (VHG546Q) /CSM/VH/VHG5-B/VHG546Q.Seq.d/                        823   0.0
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/                        817   0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/                        817   0.0
VHO504 (VHO504Q) /CSM/VH/VHO5-A/VHO504Q.Seq.d/                        817   0.0
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/                        817   0.0
VHI806 (VHI806Q) /CSM/VH/VHI8-A/VHI806Q.Seq.d/                        817   0.0
VHD305 (VHD305Q) /CSM/VH/VHD3-A/VHD305Q.Seq.d/                        817   0.0
VHD106 (VHD106Q) /CSM/VH/VHD1-A/VHD106Q.Seq.d/                        817   0.0
VHB715 (VHB715Q) /CSM/VH/VHB7-A/VHB715Q.Seq.d/                        817   0.0
VHB242 (VHB242Q) /CSM/VH/VHB2-B/VHB242Q.Seq.d/                        817   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU054030) Dictyostelium discoideum slug cDNA, clone SLK455.      823   0.0    1
(AU053548) Dictyostelium discoideum slug cDNA, clone SLI884.      823   0.0    1
(AU053363) Dictyostelium discoideum slug cDNA, clone SLI465.      823   0.0    1
(AU053267) Dictyostelium discoideum slug cDNA, clone SLI280.      823   0.0    1
(AU052974) Dictyostelium discoideum slug cDNA, clone SLF417.      823   0.0    1
(AU052524) Dictyostelium discoideum slug cDNA, clone SLD467.      823   0.0    1
(AU039588) Dictyostelium discoideum slug cDNA, clone SLE804.      823   0.0    1
(AU039561) Dictyostelium discoideum slug cDNA, clone SLE755.      823   0.0    1
(AU039543) Dictyostelium discoideum slug cDNA, clone SLE722.      823   0.0    1
(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782.      823   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q06193) RecName: Full=Elongation factor 2;          Short=EF-2;...   139   4e-32
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   132   3e-30
AF544973_1(AF544973|pid:none) Ctenopharyngodon idella elongation...   132   5e-30
(P09445) RecName: Full=Elongation factor 2;          Short=EF-2;...   132   5e-30
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   131   6e-30
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w...   131   6e-30
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet...   131   6e-30
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w...   131   6e-30
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   131   6e-30
M19997_1(M19997|pid:none) Human elongation factor 2 (EF-2) mRNA,...   131   6e-30
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLC494 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC494Z
3' end seq. 
>SLC494Z.Seq
----------ACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGC
CCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTAT
TGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATT
AGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACA
ATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGA
AGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAA
ATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCA
AATCTAAAAAAAATTTTAAAAAAAAAATAATAAAAAAAAAA
Length of 3' end seq. 451
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -