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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC492
Library SL
(Link to library)
Clone ID SLC492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1|Contig-U12865-1
Original site URL
Representative seq. ID SLC492P
(Link to Original site)
Representative DNA sequence 
>SLC492 (SLC492Q) /CSM/SL/SLC4-D/SLC492Q.Seq.d/
AAAAAAAAAATATACAAATAATGAATAAATTTTTAGCTTTGTTATTTGTTTTAGCTTTGT
TTGCTAATATTGCTTTTTCATGTGAAGGTCACCCAGAACATGATCATGGTGATGGTGATC
ATGAACATGATCATGATGAATCATTTGTTAAAATCTTAGATTCTGATAATTTCCATAATT
CAGTTTCTGAACATGACGTAACTCTTGTTATGTTTTATGCCCCATGGTGCGGTCATTGTA
AAACTTTAAAACCATTATATGAAGAAGCTGCTAAACAATTATCAGCCAACAAAAAGATTG
CAATTGCAAAAGTTGATTGTACTCAACATGAACAACTCTGTAAACAAAATAAAGTTCAAG
GTTATCCAACTTTAGTTGTTTTCAAGAATGGTAAAGCTGAACCATATGAAGGTGATAGAA
CCACTAAATCAATTGTTCAAACTTTAGAAGAAGAATTAAAACCAACTATTTCAACTTTAG
AATCAAATGAAGATATTGAAGAATTTAAAAAACAACACCCAATTAGTGTTGTTGGTTTCT
TTGATAATGATCATGATGATAGATTTAAATTATTTAGTGAATTAGCAGGAAATAATAAGA
AATCAGCTAAATTTGCCGTTGTAATTGATAAAGATTTCTCAAAGGXXXXXXXXXXCATTG
TTACCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTCAAAAACAACAACAAG
ATCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTA
AAGATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATG
AAAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTA
AACCATCATCAAATGTTAGTGATAACAAAGAAAACAATGCTTCCAATAAAGCCAAACCAT
CATCAAATACCAATGATGCCAAACCAAAGACTGATGAAACTAAAACCAAAGCTGGTTCAC
CAAAAACTGATGCCAAACCAAAAACTACTCAAGATGAATCCCTTGATAGTGCTGATCCAG
AAGCAAAAGCTGGTGACAAAGCTAAACCAAAGACTGATGCCACTGCCTCTGGTAATACCT
CATCAACCCTTGTTGTCAATGTTTTGCTTTTAGCTGCATCTGCTGCTTTAGCTCTTGTCC
TTTAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
KKNIQIMNKFLALLFVLALFANIAFSCEGHPEHDHGDGDHEHDHDESFVKILDSDNFHNS
VSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQG
YPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKKQHPISVVGFF
DNDHDDRFKLFSELAGNNKKSAKFAVVIDKDFSK---

---IVTDSANIYVNKVIVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNTND
AQNNENAKPNSAATKDSNTANNKAKPSSNVSDNKENNASNKAKPSSNTNDAKPKTDETKT
KAGSPKTDAKPKTTQDESLDSADPEAKAGDKAKPKTDATASGNTSSTLVVNVLLLAASAA
LALVL*
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkiyk**inf*lcylf*lcllillfhvkvtqnmimvmvimnmimmnhllks*iliisii
qflnmt*lllcfmphgavivkl*nhymkkllnnyqptkrlqlqklivlnmnnsvnkikfk
viql*lfsrmvklnhmkvieplnqlfkl*kkn*nqlfql*nqmkilknlknntqlvllvs
limimmidlnylvn*qeiirnqlnlpl*likisqr---

---hcyrfs*ylcq*gysksktttrstkmv*kgc*rscqqngsn*rygtt*t*gspkyk*
cskq*kc*tkfsshqrfkyr*q*s*tiikc***qrkqcfq*sqtiikyq*cqtkd**n*n
qswftkn*cqtknysr*ip**c*srsksw*qs*tkd*chclw*ylinpccqcfafscicc
fsscpl

Frame B:
kkkytnne*ifsfvicfsfvc*ycffm*rsprt*sw*w*s*t*s**iic*nlrf**fp*f
sf*t*rnscyvlcpmvrsl*nfktii*rsc*tiisqqkdcncks*lyst*ttl*tk*ssr
lsnfscfqew*s*ti*r**nh*incsnfrrriktnyfnfrik*ry*ri*kttpn*ccwfl
***s***i*ii**isrk**eis*icrcn**rflk---

---IVTDSANIYVNKVIVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNTND
AQNNENAKPNSAATKDSNTANNKAKPSSNVSDNKENNASNKAKPSSNTNDAKPKTDETKT
KAGSPKTDAKPKTTQDESLDSADPEAKAGDKAKPKTDATASGNTSSTLVVNVLLLAASAA
LALVL*

Frame C:
KKNIQIMNKFLALLFVLALFANIAFSCEGHPEHDHGDGDHEHDHDESFVKILDSDNFHNS
VSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQG
YPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKKQHPISVVGFF
DNDHDDRFKLFSELAGNNKKSAKFAVVIDKDFSK---

---llpiqlismsirl**vknnnkinknglkrmlkimptkwqqlkiwnnmnmriskiqmm
lktmkmlnqiqqppkiqipltiklnhhqmlvitkktmlpikpnhhqipmmpnqrlmklkp
klvhqklmpnqkllkmnplivliqkqklvtklnqrlmplplviphqpllsmfcf*lhlll
*llsf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC492 (SLC492Q) /CSM/SL/SLC4-D/SLC492Q.Seq.d/                       2309   0.0
SLE273 (SLE273Q) /CSM/SL/SLE2-D/SLE273Q.Seq.d/                       1251   0.0
AFO809 (AFO809Q) /CSM/AF/AFO8-A/AFO809Q.Seq.d/                       1179   0.0
SLH760 (SLH760Q) /CSM/SL/SLH7-C/SLH760Q.Seq.d/                       1162   0.0
SSK563 (SSK563Q) /CSM/SS/SSK5-C/SSK563Q.Seq.d/                       1090   0.0
SSI241 (SSI241Q) /CSM/SS/SSI2-B/SSI241Q.Seq.d/                       1090   0.0
SSF377 (SSF377Q) /CSM/SS/SSF3-D/SSF377Q.Seq.d/                       1090   0.0
SSL677 (SSL677Q) /CSM/SS/SSL6-D/SSL677Q.Seq.d/                       1086   0.0
SSG743 (SSG743Q) /CSM/SS/SSG7-B/SSG743Q.Seq.d/                       1086   0.0
AFL268 (AFL268Q) /CSM/AF/AFL2-C/AFL268Q.Seq.d/                       1076   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060980) Dictyostelium discoideum slug cDNA, clone SLC492.     1120   0.0    1
(AU061442) Dictyostelium discoideum slug cDNA, clone SLE273.     1112   0.0    1
(BJ328895) Dictyostelium discoideum cDNA clone:dda30b04, 5' ...  1055   0.0    1
(AU062143) Dictyostelium discoideum slug cDNA, clone SLH760.     1027   0.0    2
(BJ328273) Dictyostelium discoideum cDNA clone:dda23g18, 5' ...   995   0.0    2
(BJ326399) Dictyostelium discoideum cDNA clone:dda16h11, 5' ...   965   0.0    1
(AU034570) Dictyostelium discoideum slug cDNA, clone SLC492.      644   0.0    2
(C90200) Dictyostelium discoideum slug cDNA, clone SSI241.        644   0.0    2
(C94225) Dictyostelium discoideum slug cDNA, clone SSK563.        644   0.0    2
(C92814) Dictyostelium discoideum slug cDNA, clone SSF377.        644   0.0    2
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q12730) RecName: Full=Protein disulfide-isomerase;          Sho...   134   5e-30
(Q00248) RecName: Full=Protein disulfide-isomerase;          Sho...   128   3e-28
CR382131_125(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   126   1e-27
DQ357222_1(DQ357222|pid:none) Teladorsagia circumcincta protein ...   126   1e-27
DQ440216_1(DQ440216|pid:none) Aedes aegypti clone AET-2353 ER pr...   126   2e-27
AJ419174_1(AJ419174|pid:none) Ostertagia ostertagi mRNA for disu...   125   4e-27
AJ005807_1(AJ005807|pid:none) Caenorhabditis briggsae pdi-1 gene...   125   4e-27
(Q17967) RecName: Full=Protein disulfide-isomerase 1;          S...   124   8e-27
AJ720264_1(AJ720264|pid:none) Gallus gallus mRNA for hypothetica...   123   1e-26
U12440_1(U12440|pid:none) Onchocerca volvulus protein disulfide ...   123   1e-26
protein update 2009. 6. 1
PSORT 

 psg: 0.99  gvh: 0.74  alm: 0.20  top: 0.03  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SLC492 is pla
5' end seq. ID SLC492F
5' end seq. 
>SLC492F.Seq
AAAAAAAAAATATACAAATAATGAATAAATTTTTAGCTTTGTTATTTGTTTTAGCTTTGT
TTGCTAATATTGCTTTTTCATGTGAAGGTCACCCAGAACATGATCATGGTGATGGTGATC
ATGAACATGATCATGATGAATCATTTGTTAAAATCTTAGATTCTGATAATTTCCATAATT
CAGTTTCTGAACATGACGTAACTCTTGTTATGTTTTATGCCCCATGGTGCGGTCATTGTA
AAACTTTAAAACCATTATATGAAGAAGCTGCTAAACAATTATCAGCCAACAAAAAGATTG
CAATTGCAAAAGTTGATTGTACTCAACATGAACAACTCTGTAAACAAAATAAAGTTCAAG
GTTATCCAACTTTAGTTGTTTTCAAGAATGGTAAAGCTGAACCATATGAAGGTGATAGAA
CCACTAAATCAATTGTTCAAACTTTAGAAGAAGAATTAAAACCAACTATTTCAACTTTAG
AATCAAATGAAGATATTGAAGAATTTAAAAAACAACACCCAATTAGTGTTGTTGGTTTCT
TTGATAATGATCATGATGATAGATTTAAATTATTTAGTGAATTAGCAGGAAATAATAAGA
AATCAGCTAAATTTGCCGTTGTAATTGATAAAGATTTCTCAAAGG----------
Length of 5' end seq. 645
3' end seq. ID SLC492Z
3' end seq. 
>SLC492Z.Seq
----------CATTGTTACCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTC
AAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACA
AAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATG
ATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCG
CTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAACAAAGAAAACAATGCTTCCA
ATAAAGCCAAACCATCATCAAATACCAATGATGCCAAACCAAAGACTGATGAAACTAAAA
CCAAAGCTGGTTCACCAAAAACTGATGCCAAACCAAAAACTACTCAAGATGAATCCCTTG
ATAGTGCTGATCCAGAAGCAAAAGCTGGTGACAAAGCTAAACCAAAGACTGATGCCACTG
CCTCTGGTAATACCTCATCAACCCTTGTTGTCAATGTTTTGCTTTTAGCTGCATCTGCTG
CTTTAGCTCTTGTCCTTTAA
Length of 3' end seq. 550
Connected seq. ID SLC492P
Connected seq. 
>SLC492P.Seq
AAAAAAAAAATATACAAATAATGAATAAATTTTTAGCTTTGTTATTTGTTTTAGCTTTGT
TTGCTAATATTGCTTTTTCATGTGAAGGTCACCCAGAACATGATCATGGTGATGGTGATC
ATGAACATGATCATGATGAATCATTTGTTAAAATCTTAGATTCTGATAATTTCCATAATT
CAGTTTCTGAACATGACGTAACTCTTGTTATGTTTTATGCCCCATGGTGCGGTCATTGTA
AAACTTTAAAACCATTATATGAAGAAGCTGCTAAACAATTATCAGCCAACAAAAAGATTG
CAATTGCAAAAGTTGATTGTACTCAACATGAACAACTCTGTAAACAAAATAAAGTTCAAG
GTTATCCAACTTTAGTTGTTTTCAAGAATGGTAAAGCTGAACCATATGAAGGTGATAGAA
CCACTAAATCAATTGTTCAAACTTTAGAAGAAGAATTAAAACCAACTATTTCAACTTTAG
AATCAAATGAAGATATTGAAGAATTTAAAAAACAACACCCAATTAGTGTTGTTGGTTTCT
TTGATAATGATCATGATGATAGATTTAAATTATTTAGTGAATTAGCAGGAAATAATAAGA
AATCAGCTAAATTTGCCGTTGTAATTGATAAAGATTTCTCAAAGG----------CATTG
TTACCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTCAAAAACAACAACAAG
ATCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTA
AAGATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATG
AAAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTA
AACCATCATCAAATGTTAGTGATAACAAAGAAAACAATGCTTCCAATAAAGCCAAACCAT
CATCAAATACCAATGATGCCAAACCAAAGACTGATGAAACTAAAACCAAAGCTGGTTCAC
CAAAAACTGATGCCAAACCAAAAACTACTCAAGATGAATCCCTTGATAGTGCTGATCCAG
AAGCAAAAGCTGGTGACAAAGCTAAACCAAAGACTGATGCCACTGCCTCTGGTAATACCT
CATCAACCCTTGTTGTCAATGTTTTGCTTTTAGCTGCATCTGCTGCTTTAGCTCTTGTCC
TTTAA
Length of connected seq. 1195
Full length Seq ID -
Full length Seq. -
Length of full length seq. -