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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC490
Library SL
(Link to library)
Clone ID SLC490
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16444-1
Original site URL
Representative seq. ID SLC490Z
(Link to Original site)
Representative DNA sequence 
>SLC490 (SLC490Q) /CSM/SL/SLC4-D/SLC490Q.Seq.d/
XXXXXXXXXXACATCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTC
ACTGTTCCAAAAACATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAA
ATTAAAGAAGATTTGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAA
GGTTATCTTTTACAAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAA
ATTATCCAAAGAAACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAA
GCAATCGAAAGACAACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGT
TCTTTATTATTAACTAAATAACATTACAATATATCAAAATAAATAATAAATAAATACTCT
ATTTAAAAAGTAAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---IIDAISKLRSRGVSFLTVPKTYYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKG
YLLQIFTNNVEDKPTVFFEIIQRNNHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcs
llltk*hynisk*iinkysi*kvk
Translated Amino Acid sequence (All Frames) 
Frame A:
---hh*cylkikiswclfphcsknilyitqreittlfirn*rrfghfreithfnrl**qr
lsftnlyk*c*r*tncfl*nypkkqp*wfrcw*l*ipl*snrkttrnswkligvsqlqmf
fiin*itlqyikinnk*ilylkskk


Frame B:
---IIDAISKLRSRGVSFLTVPKTYYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKG
YLLQIFTNNVEDKPTVFFEIIQRNNHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcs
llltk*hynisk*iinkysi*kvk


Frame C:
---slmlsqn*dlvvslsslfqkhtihhsernyntlh*klkkiwtl*rnytf*simmtkv
ifykslqimlkinqlfslklskettmmvsvlvtlnpslkqskdnkklvetyrcvsitnvl
yy*lnnitiyqnk**intlfkk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ394 (VSJ394Q) /CSM/VS/VSJ3-D/VSJ394Q.Seq.d/                        722   0.0
VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/                        722   0.0
VSF755 (VSF755Q) /CSM/VS/VSF7-C/VSF755Q.Seq.d/                        722   0.0
VSE214 (VSE214Q) /CSM/VS/VSE2-A/VSE214Q.Seq.d/                        722   0.0
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/                        722   0.0
VSB809 (VSB809Q) /CSM/VS/VSB8-A/VSB809Q.Seq.d/                        722   0.0
VHK157 (VHK157Q) /CSM/VH/VHK1-C/VHK157Q.Seq.d/                        722   0.0
VFO548 (VFO548Q) /CSM/VF/VFO5-B/VFO548Q.Seq.d/                        722   0.0
VFN738 (VFN738Q) /CSM/VF/VFN7-B/VFN738Q.Seq.d/                        722   0.0
VFN489 (VFN489Q) /CSM/VF/VFN4-D/VFN489Q.Seq.d/                        722   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   700   0.0    1
(AU269851) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    1
(AU267100) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    1
(AU265736) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    1
(AU263467) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    1
(AU262948) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    1
(AU262259) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    1
(AU052990) Dictyostelium discoideum slug cDNA, clone SLF461.      700   0.0    1
(AU052907) Dictyostelium discoideum slug cDNA, clone SLF304.      700   0.0    1
(AU040001) Dictyostelium discoideum slug cDNA, clone SLH413.      700   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   216   1e-55
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA...   157   8e-38
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ...   154   1e-36
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   154   1e-36
FJ501992_1(FJ501992|pid:none) Aristichthys nobilis clone A21 4-h...   150   2e-35
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ...   149   2e-35
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   149   2e-35
BT045841_1(BT045841|pid:none) Salmo salar clone ssal-rgf-534-157...   148   5e-35
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos...   148   5e-35
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   147   8e-35
protein update 2009. 6. 1
PSORT 

 psg: 0.90  gvh: 0.26  alm: 0.51  top: 0.73  tms: 0.00  mit: 0.43  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SLC490 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC490Z
3' end seq. 
>SLC490Z.Seq
----------ACATCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTC
ACTGTTCCAAAAACATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAA
ATTAAAGAAGATTTGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAA
GGTTATCTTTTACAAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAA
ATTATCCAAAGAAACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAA
GCAATCGAAAGACAACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGT
TCTTTATTATTAACTAAATAACATTACAATATATCAAAATAAATAATAAATAAATACTCT
ATTTAAAAAGTAAAAAA
Length of 3' end seq. 427
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -