NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC489
Library SL
(Link to library)
Clone ID SLC489
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLC489P
(Link to Original site)
Representative DNA sequence 
>SLC489 (SLC489Q) /CSM/SL/SLC4-D/SLC489Q.Seq.d/
CAGTAACATTAAATATTAATAATTAGATACATTGAAAAAAAAAGAAATAATAATAATTAA
GAATAAAAAAAAAAAAAAAAACTATAATAACATTTCAATTGTATTTAAAAAAAAAAAAAA
AATCTCATATACATATACCATTAATATAGTAAAAGTACCAGTAATAAAATGAGAATATTA
AAATTGGCAGCACTTAGTTGCTTATTATTTATAGCACCATCACTTTCAATTAATTGCGAT
GGTTTATCAAAAGATCAATGTGAACAAAACTTTCCTCAATGTCAAATTTTAACTGCAAAG
AGTTGTTGTGGTGAAAGTAAATCATATTGTGCTGAAAGAGATAGTAACGATTGTCTTGCT
AGTAAAATTTCATGTAAAAAGGATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTGT
ACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACATGTTCATCATTAAAT
TGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGTCATGAAACATCATGT
TGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGT
GCAACTGGTCAAGGCACATCAGGTGGTAXXXXXXXXXXATAATAATAATAATTTAATAAC
TAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAA
TATTCAAAGACTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACCATAAACA
AAACTAAAAATAAATTAAAAAAAAAAATAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
q*h*iliiryiekkrnnnn*e*kkkkkl**hfnci*kkkknliyiyh*YSKSTSNKMRIL
KLAALSCLLFIAPSLSINCDGLSKDQCEQNFPQCQILTAKSCCGESKSYCAERDSNDCLA
SKISCKKDPQGNIYEFWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSC
CPDIPQCQIPATGGGPATGSATGQGTSGG---

---NNNNLITNHYHQ**hynitlitilffniqrlykkkkkkkkkktnhkqn*k*ikkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
q*h*iliiryiekkrnnnn*e*kkkkkl**hfnci*kkkknliyiyh*YSKSTSNKMRIL
KLAALSCLLFIAPSLSINCDGLSKDQCEQNFPQCQILTAKSCCGESKSYCAERDSNDCLA
SKISCKKDPQGNIYEFWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSC
CPDIPQCQIPATGGGPATGSATGQGTSGG---

---iiiii**liiiinnniiill**qyfflifkdftkkkkkkkkkkqtinktknklkkki

Frame B:
sniky**ldtlkkkeiiiiknkkkkknynnisivfkkkkkisytytinivkvpvik*ey*
nwqhlvayyl*hhhfqliamvyqkinvnktflnvkf*lqrvvvvkvnhivlkeivtivll
vkfhvkrilkvifmnfgvvvhqvvvsqilfhpmqhvhh*ivmlnk*vanmfnkhvmkhhv
vliflnvkflqlavaqllevqlvkahqvv---

---****fnn*slssiitl*yyfnnntff*ysktlqkkkkkkkkknkp*tklkin*kkk*

Frame C:
vtlninn*ih*kkkk***lrikkkkktiitfqlylkkkkkshihipli**kyq**nenik
igst*lliiystitfn*lrwfikrsm*tklssmsnfnckellw*k*iilc*kr**rlsc*
*nfm*kgssr*yl*ile*lytk*wfhrfysiqcnmfiikl*cstnelqicstsms*niml
s*yssmsnscnwrwpsywkcnwsrhirw---

---NNNNLITNHYHQ**hynitlitilffniqrlykkkkkkkkkktnhkqn*k*ikkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD212 (SSD212Q) /CSM/SS/SSD2-A/SSD212Q.Seq.d/                       1001   0.0
SLE207 (SLE207Q) /CSM/SL/SLE2-A/SLE207Q.Seq.d/                       1001   0.0
SLC489 (SLC489Q) /CSM/SL/SLC4-D/SLC489Q.Seq.d/                       1001   0.0
AFJ834 (AFJ834Q) /CSM/AF/AFJ8-B/AFJ834Q.Seq.d/                        985   0.0
SFF412 (SFF412Q) /CSM/SF/SFF4-A/SFF412Q.Seq.d/                        983   0.0
CFA450 (CFA450Q) /CSM/CF/CFA4-C/CFA450Q.Seq.d/                        977   0.0
SFJ658 (SFJ658Q) /CSM/SF/SFJ6-C/SFJ658Q.Seq.d/                        961   0.0
CHD478 (CHD478Q) /CSM/CH/CHD4-D/CHD478Q.Seq.d/                        954   0.0
SFL388 (SFL388Q) /CSM/SF/SFL3-D/SFL388Q.Seq.d/                        950   0.0
AFC892 (AFC892Q) /CSM/AF/AFC8-D/AFC892Q.Seq.d/                        946   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060979) Dictyostelium discoideum slug cDNA, clone SLC489.     1003   0.0    2
(AC115584) Dictyostelium discoideum chromosome 2 map complem...   785   0.0    4
(M26238) D.discoideum spore coat protein SP70 gene, complete...   785   0.0    3
(AU061424) Dictyostelium discoideum slug cDNA, clone SLE207.     1003   0.0    1
(BJ386874) Dictyostelium discoideum cDNA clone:dds11h04, 5' ...   983   0.0    1
(BJ327394) Dictyostelium discoideum cDNA clone:dda20d10, 5' ...   930   0.0    2
(BJ358432) Dictyostelium discoideum cDNA clone:ddc1d14, 5' e...   967   0.0    1
(BJ389905) Dictyostelium discoideum cDNA clone:dds20c16, 5' ...   963   0.0    1
(BJ363868) Dictyostelium discoideum cDNA clone:ddc28l20, 5' ...   955   0.0    1
(BJ324549) Dictyostelium discoideum cDNA clone:dda6h24, 5' e...   948   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   288   1e-76
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...   134   2e-33
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    98   3e-19
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        96   1e-18
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    92   1e-17
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...    59   2e-07
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    56   2e-06
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    56   2e-06
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    54   8e-06
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    48   3e-04
protein update 2009. 6. 1
PSORT 

 psg: 0.82  gvh: 0.78  alm: 0.28  top: 0.07  tms: 0.07  mit: 0.44  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SLC489 is cyt
5' end seq. ID SLC489F
5' end seq. 
>SLC489F.Seq
CAGTAACATTAAATATTAATAATTAGATACATTGAAAAAAAAAGAAATAATAATAATTAA
GAATAAAAAAAAAAAAAAAAACTATAATAACATTTCAATTGTATTTAAAAAAAAAAAAAA
AATCTCATATACATATACCATTAATATAGTAAAAGTACCAGTAATAAAATGAGAATATTA
AAATTGGCAGCACTTAGTTGCTTATTATTTATAGCACCATCACTTTCAATTAATTGCGAT
GGTTTATCAAAAGATCAATGTGAACAAAACTTTCCTCAATGTCAAATTTTAACTGCAAAG
AGTTGTTGTGGTGAAAGTAAATCATATTGTGCTGAAAGAGATAGTAACGATTGTCTTGCT
AGTAAAATTTCATGTAAAAAGGATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTGT
ACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACATGTTCATCATTAAAT
TGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGTCATGAAACATCATGT
TGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGT
GCAACTGGTCAAGGCACATCAGGTGGTA----------
Length of 5' end seq. 628
3' end seq. ID SLC489Z
3' end seq. 
>SLC489Z.Seq
----------ATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTAT
AATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACAAACCATAAACAAAACTAAAAATAAATTAAAAAAAAAAAT
AA
Length of 3' end seq. 172
Connected seq. ID SLC489P
Connected seq. 
>SLC489P.Seq
CAGTAACATTAAATATTAATAATTAGATACATTGAAAAAAAAAGAAATAATAATAATTAA
GAATAAAAAAAAAAAAAAAAACTATAATAACATTTCAATTGTATTTAAAAAAAAAAAAAA
AATCTCATATACATATACCATTAATATAGTAAAAGTACCAGTAATAAAATGAGAATATTA
AAATTGGCAGCACTTAGTTGCTTATTATTTATAGCACCATCACTTTCAATTAATTGCGAT
GGTTTATCAAAAGATCAATGTGAACAAAACTTTCCTCAATGTCAAATTTTAACTGCAAAG
AGTTGTTGTGGTGAAAGTAAATCATATTGTGCTGAAAGAGATAGTAACGATTGTCTTGCT
AGTAAAATTTCATGTAAAAAGGATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTGT
ACACCAAGTAGTGGTTTCACAGATTTTATTCCATCCAATGCAACATGTTCATCATTAAAT
TGTAATGCTCAACAAATGAGTTGCAAATATGTTCAACAAGCATGTCATGAAACATCATGT
TGTCCTGATATTCCTCAATGTCAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGT
GCAACTGGTCAAGGCACATCAGGTGGTA----------ATAATAATAATAATTTAATAAC
TAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAA
TATTCAAAGACTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACCATAAACA
AAACTAAAAATAAATTAAAAAAAAAAATAA
Length of connected seq. 800
Full length Seq ID -
Full length Seq. -
Length of full length seq. -