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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC486
Library SL
(Link to library)
Clone ID SLC486
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16480-1
Original site URL
Representative seq. ID SLC486E
(Link to Original site)
Representative DNA sequence 
>SLC486 (SLC486Q) /CSM/SL/SLC4-D/SLC486Q.Seq.d/
GTCATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATG
GTGATTTTGGTAATTTCTGTGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATT
ATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTAGAGGTATGGCCGTTCATAACT
TTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTT
TAATTCAAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGGAAATGGGATGTCATTT
GTGCAAATGGTTCATACTATGGTGATATGTCAACAAGTATGAACAGTGAAAGTTATAACG
ACAATGAACCAGGTTCATCATCAACTGTTATTCCATTCTTTGCTTTAATTATTTTCTCAA
TTATCTTTGCTTTGCTTTAAAAAAAAAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
HFLKTGQEHSLPPSGTRHYGDFGNFCAFSQDMMDTGYYYYETDHVTAALVIGRGMAVHNF
TDKGNSDVGGSRCGQGVIALIQDADYSLNLPMDWKWDVICANGSYYGDMSTSMNSESYND
NEPGSSSTVIPFFALIIFSIIFALL*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vis*rlvknilshhleldimvilvisvlslki*wilvtiimrlimslpl*slvevwpfit
llikvivmlvvlvvvkvsll*fkmlitv*ifqwigngmsfvqmvhtmvicqqv*tvkvit
tmnqvhhqllfhsll*lfsqlsllcfkkkk


Frame B:
sflkdwsrtfsptiwn*tlw*fw*flcflsrydgywllll*d*schcrfshw*rygrs*l
y**r***cwwfslwsrchcfnsrc*lqfkssnglemgchlckwfilw*yvnkyeq*kl*r
q*trfiincysilcfnyflnylcfalkkkk


Frame C:
HFLKTGQEHSLPPSGTRHYGDFGNFCAFSQDMMDTGYYYYETDHVTAALVIGRGMAVHNF
TDKGNSDVGGSRCGQGVIALIQDADYSLNLPMDWKWDVICANGSYYGDMSTSMNSESYND
NEPGSSSTVIPFFALIIFSIIFALL*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC821 (VSC821Q) /CSM/VS/VSC8-A/VSC821Q.Seq.d/                        868   0.0
VSC592 (VSC592Q) /CSM/VS/VSC5-D/VSC592Q.Seq.d/                        868   0.0
SSJ760 (SSJ760Q) /CSM/SS/SSJ7-C/SSJ760Q.Seq.d/                        868   0.0
SSF872 (SSF872Q) /CSM/SS/SSF8-C/SSF872Q.Seq.d/                        868   0.0
SSF154 (SSF154Q) /CSM/SS/SSF1-C/SSF154Q.Seq.d/                        868   0.0
SSE162 (SSE162Q) /CSM/SS/SSE1-C/SSE162Q.Seq.d/                        868   0.0
SLH559 (SLH559Q) /CSM/SL/SLH5-C/SLH559Q.Seq.d/                        868   0.0
SLG447 (SLG447Q) /CSM/SL/SLG4-B/SLG447Q.Seq.d/                        868   0.0
SLD427 (SLD427Q) /CSM/SL/SLD4-B/SLD427Q.Seq.d/                        868   0.0
SLC486 (SLC486Q) /CSM/SL/SLC4-D/SLC486Q.Seq.d/                        868   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262814) Dictyostelium discoideum vegetative cDNA clone:VS...   868   0.0    1
(AU262658) Dictyostelium discoideum vegetative cDNA clone:VS...   868   0.0    1
(AU052500) Dictyostelium discoideum slug cDNA, clone SLD427.      868   0.0    1
(AU039797) Dictyostelium discoideum slug cDNA, clone SLG447.      868   0.0    1
(AU039525) Dictyostelium discoideum slug cDNA, clone SLA795.      868   0.0    1
(AU039325) Dictyostelium discoideum slug cDNA, clone SLH559.      868   0.0    1
(AU037675) Dictyostelium discoideum slug cDNA, clone SSE162.      868   0.0    1
(AU034566) Dictyostelium discoideum slug cDNA, clone SLC486.      868   0.0    1
(AU033369) Dictyostelium discoideum slug cDNA, clone SLA676.      868   0.0    1
(C92700) Dictyostelium discoideum slug cDNA, clone SSF872.        868   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   283   2e-75
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   110   2e-23
CP000828_5114(CP000828|pid:none) Acaryochloris marina MBIC11017,...    47   2e-04
BT015997_1(BT015997|pid:none) Drosophila melanogaster RE42883 fu...    44   0.002
AE013599_1346(AE013599|pid:none) Drosophila melanogaster chromos...    44   0.002
FN315361_1(FN315361|pid:none) Schistosoma japonicum isolate Anhu...    43   0.003
FN320684_1(FN320684|pid:none) Schistosoma japonicum isolate Anhu...    43   0.003
AK340739_1(AK340739|pid:none) Acyrthosiphon pisum ACYPI003921 mR...    43   0.003
AK340740_1(AK340740|pid:none) Acyrthosiphon pisum ACYPI003921 mR...    43   0.004
(P28757) RecName: Full=Superoxide dismutase [Cu-Zn] 2;          ...    42   0.005
protein update 2009. 7. 4
PSORT 

 psg: 0.78  gvh: 0.43  alm: 0.14  top: 0.80  tms: 0.07  mit: 0.25  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLC486 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC486E
Full length Seq. 
>SLC486E.Seq
GTCATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATG
GTGATTTTGGTAATTTCTGTGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATT
ATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTAGAGGTATGGCCGTTCATAACT
TTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTT
TAATTCAAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGGAAATGGGATGTCATTT
GTGCAAATGGTTCATACTATGGTGATATGTCAACAAGTATGAACAGTGAAAGTTATAACG
ACAATGAACCAGGTTCATCATCAACTGTTATTCCATTCTTTGCTTTAATTATTTTCTCAA
TTATCTTTGCTTTGCTTTAAAAAAAAAAAAA
Length of full length seq. 451