NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC484
Library SL
(Link to library)
Clone ID SLC484
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15497-1
Original site URL
Representative seq. ID SLC484Z
(Link to Original site)
Representative DNA sequence 
>SLC484 (SLC484Q) /CSM/SL/SLC4-D/SLC484Q.Seq.d/
XXXXXXXXXXAAGCCGGTTCAGGTGCTTCATTAACCTTCCCAATTCAATGTTCAGCATTA
AGAAAGAACGGTTTCGTCGTCATTAAAGGTTTCCCATGTAAGATTGTTGATATGTCAACT
TCCAAAACCGGTAAACACGGTCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACT
GGTAAGAAATACGAAGAAATTTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGC
AGAAAGGAATACACCGTTATGGATGTTCAAGATGGTTACTTATCACTCTTGGATGCTGGT
GGTGAAGTCAAAGAAGATCTTGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCAA
ATGTTAAAAGAAGGTAAAGAGCCATTAGTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGT
GTCGTCTCTGTTAAAGTCAGCAACAATTAAATTGTTTAAAATTCTCTTTATA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---AGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTG
KKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGGEVKEDLALPEDDIGKEITQM
LKEGKEPLVSVISALGKEGVVSVKVSNN*iv*nsly
Translated Amino Acid sequence (All Frames) 
Frame A:
---srfrcfinlpnsmfsikkerfrrh*rfpm*dc*yvnfqnr*trsrqs*hhcyrylhw
*eirrnlpinsqh*ctkcqqkgihrygcsrwllitlgcww*sqrrscpprr*yw*rnypn
vkrr*raisfshlcfr*rrcrlc*sqqqlnclkfsl


Frame B:
---AGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTG
KKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGGEVKEDLALPEDDIGKEITQM
LKEGKEPLVSVISALGKEGVVSVKVSNN*iv*nsly


Frame C:
---pvqvlh*psqfnvqh*ertvssslkvshvrllicqlpkpvntvtpkltsllsisslv
rntkkfahqlttlmyqmsaerntplwmfkmvtyhswmlvvkskkilpsqkmilvkklpkc
*kkvksh*fqssll*vkkvssllksatiklfkilfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG552 (VSG552Q) /CSM/VS/VSG5-C/VSG552Q.Seq.d/                        916   0.0
VSE527 (VSE527Q) /CSM/VS/VSE5-B/VSE527Q.Seq.d/                        916   0.0
VSE475 (VSE475Q) /CSM/VS/VSE4-D/VSE475Q.Seq.d/                        916   0.0
VSD448 (VSD448Q) /CSM/VS/VSD4-B/VSD448Q.Seq.d/                        916   0.0
VSD284 (VSD284Q) /CSM/VS/VSD2-D/VSD284Q.Seq.d/                        916   0.0
VSA438 (VSA438Q) /CSM/VS/VSA4-B/VSA438Q.Seq.d/                        916   0.0
VHD324 (VHD324Q) /CSM/VH/VHD3-A/VHD324Q.Seq.d/                        916   0.0
SSL858 (SSL858Q) /CSM/SS/SSL8-C/SSL858Q.Seq.d/                        916   0.0
SSK510 (SSK510Q) /CSM/SS/SSK5-A/SSK510Q.Seq.d/                        916   0.0
SSF337 (SSF337Q) /CSM/SS/SSF3-B/SSF337Q.Seq.d/                        916   0.0
own update 2004. 7.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284284) Dictyostelium discoideum gamete cDNA clone:FC-AH2...   916   0.0    1
(AU271395) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   916   0.0    1
(AU266617) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU264047) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU263777) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU263170) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU263135) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU261476) Dictyostelium discoideum vegetative cDNA clone:VS...   916   0.0    1
(AU051940) Dictyostelium discoideum slug cDNA, clone SSC438.      916   0.0    1
(AU034805) Dictyostelium discoideum slug cDNA, clone SLE525.      916   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P10160) RecName: Full=Eukaryotic translation initiation factor ...   197   9e-50
AL596185_11(AL596185|pid:none) Mouse DNA sequence from clone RP2...   196   3e-49
(P63241) RecName: Full=Eukaryotic translation initiation factor ...   196   3e-49
AY129319_1(AY129319|pid:none) Homo sapiens eukaryotic initiation...   196   3e-49
BC070048_1(BC070048|pid:none) Homo sapiens eukaryotic translatio...   194   8e-49
(Q6IS14) RecName: Full=Eukaryotic translation initiation factor ...   194   8e-49
S72024_1(S72024|pid:none) eif-5A=eukaryotic initiation factor 5A...   194   1e-48
(Q07460) RecName: Full=Eukaryotic translation initiation factor ...   190   1e-47
BT075853_1(BT075853|pid:none) Caligus rogercresseyi clone crog-e...   189   2e-47
(Q5R898) RecName: Full=Eukaryotic translation initiation factor ...   188   4e-47
protein update 2009. 6. 1
PSORT 

 psg: 0.90  gvh: 0.61  alm: 0.39  top: 0.73  tms: 0.00  mit: 0.23  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLC484 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC484Z
3' end seq. 
>SLC484Z.Seq
----------AAGCCGGTTCAGGTGCTTCATTAACCTTCCCAATTCAATGTTCAGCATTA
AGAAAGAACGGTTTCGTCGTCATTAAAGGTTTCCCATGTAAGATTGTTGATATGTCAACT
TCCAAAACCGGTAAACACGGTCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACT
GGTAAGAAATACGAAGAAATTTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGC
AGAAAGGAATACACCGTTATGGATGTTCAAGATGGTTACTTATCACTCTTGGATGCTGGT
GGTGAAGTCAAAGAAGATCTTGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCAA
ATGTTAAAAGAAGGTAAAGAGCCATTAGTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGT
GTCGTCTCTGTTAAAGTCAGCAACAATTAAATTGTTTAAAATTCTCTTTATA
Length of 3' end seq. 462
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -