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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC481
Library SL
(Link to library)
Clone ID SLC481
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SLC481Z
(Link to Original site)
Representative DNA sequence 
>SLC481 (SLC481Q) /CSM/SL/SLC4-D/SLC481Q.Seq.d/
XXXXXXXXXXAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACA
AGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACC
TACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGG
TGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCTG
GAAACAGTATTGCCGTCGTAGTACTAATACAATCAACTATGGTAATACTATGCCATTATC
ACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAAAAAACCAAATGTAACTTACATAA
CATAAATAAAAGAATATTGTTGATATTTGTTCATAATTAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---FKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGG
AFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPLSQGINFN*nyqkkktkcnlhni
nkrillifvhn*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---nskiltmllpgimkshkvshlpssqtikrissngldlpdltvv*lt*m*lqtvlklv
vplevkkrpevvenlaqtagnsiavvvliqstmvilchyhkvsiltkitkkkkpnvtyit
*ikeyc*ylfiik


Frame B:
---iqks*rcfcle**sptrslifplhkqskeylqmawtyri*lwys*rkcsykrc*nww
clwr*krdrrw*riwlrqletvlps*y*ynqlw*yyaiitryqf*lklpkkknqm*lt*h
k*knivdics*lk


Frame C:
---FKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGPTGSDCGIVNVNVATNGAEIGG
AFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPLSQGINFN*nyqkkktkcnlhni
nkrillifvhn*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI387 (SLI387Q) /CSM/SL/SLI3-D/SLI387Q.Seq.d/                        708   0.0
SLH643 (SLH643Q) /CSM/SL/SLH6-B/SLH643Q.Seq.d/                        708   0.0
SLG820 (SLG820Q) /CSM/SL/SLG8-A/SLG820Q.Seq.d/                        708   0.0
SLC481 (SLC481Q) /CSM/SL/SLC4-D/SLC481Q.Seq.d/                        708   0.0
SLC178 (SLC178Q) /CSM/SL/SLC1-D/SLC178Q.Seq.d/                        708   0.0
SLK708 (SLK708Q) /CSM/SL/SLK7-A/SLK708Q.Seq.d/                        704   0.0
SLC485 (SLC485Q) /CSM/SL/SLC4-D/SLC485Q.Seq.d/                        702   0.0
SLI488 (SLI488Q) /CSM/SL/SLI4-D/SLI488Q.Seq.d/                        700   0.0
SLG622 (SLG622Q) /CSM/SL/SLG6-A/SLG622Q.Seq.d/                        698   0.0
SLC819 (SLC819Q) /CSM/SL/SLC8-A/SLC819Q.Seq.d/                        698   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034467) Dictyostelium discoideum slug cDNA, clone SLC178.      632   0.0    2
(AU039362) Dictyostelium discoideum slug cDNA, clone SLH643.      632   0.0    2
(AU039952) Dictyostelium discoideum slug cDNA, clone SLG820.      632   0.0    2
(AU053323) Dictyostelium discoideum slug cDNA, clone SLI387.      632   0.0    2
(AU034563) Dictyostelium discoideum slug cDNA, clone SLC481.      632   0.0    2
(AU033573) Dictyostelium discoideum slug cDNA, clone SLB182.      632   0.0    2
(AU033399) Dictyostelium discoideum slug cDNA, clone SLA722.      632   0.0    2
(AU054099) Dictyostelium discoideum slug cDNA, clone SLK708.      632   0.0    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...   632   0.0    2
(AU034565) Dictyostelium discoideum slug cDNA, clone SLC485.      632   0.0    2
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   179   3e-44
AY250704_1(AY250704|pid:none) Glycine max aldehyde dehydrogenase...   128   5e-29
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   125   3e-28
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   125   3e-28
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   125   3e-28
EF215151_1(EF215151|pid:none) Callithrix jacchus clone G21-51.1_...   125   3e-28
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   125   4e-28
EF145268_1(EF145268|pid:none) Populus trichocarpa clone WS01122_...   125   6e-28
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   125   6e-28
T14821(T14821) aldehyde dehydrogenase homolog Dha1 - sorghum (fr...   124   8e-28
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLC481 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC481Z
3' end seq. 
>SLC481Z.Seq
----------AAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACA
AGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACC
TACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGG
TGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCTG
GAAACAGTATTGCCGTCGTAGTACTAATACAATCAACTATGGTAATACTATGCCATTATC
ACAAGGTATCAATTTTAACTAAAATTACCAAAAAAAAAAAACCAAATGTAACTTACATAA
CATAAATAAAAGAATATTGTTGATATTTGTTCATAATTAAAAA
Length of 3' end seq. 393
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -