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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC480
Library SL
(Link to library)
Clone ID SLC480
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13538-1
Original site URL
Representative seq. ID SLC480Z
(Link to Original site)
Representative DNA sequence 
>SLC480 (SLC480Q) /CSM/SL/SLC4-D/SLC480Q.Seq.d/
XXXXXXXXXXCTACGCAAGATTCTTAAAGAAAACTGGTCGTGTTCAAATCCCAAAATGGA
ATGATATCGCCAAAACTGCCACCTACAGAGAACTCCCACCAACCAACCCAGATTGGATTT
ACTACAGAATTGCCACCCTTGCCCGTAAAGTTTACATCCGTGGTGGTGATGGTGTTGCAA
CCTACAGAAGAGTTTTCGGTGGTAACCGTAGAAACGGTGTCAGACCAAATCACTTTGCCG
ATGTCAATGGTGGAAACATCCGTTATTGTTTAAAACAATTACAAAACTTAAAAGTCATTG
AAACCGACGCTGTCAAAGGTGGTCGTACCATCACTGCTACCGGCCGTAGAGATCTCGACA
GAATCGCCAAGCAAATCTATGACAAAAAAAACAAAATCTAAATAATCACGATTTAAGTAT
TTAAATGTTTTGCAACAAAGATTAACAAAATATAATAAAAACTAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---YARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVAT
YRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDR
IAKQIYDKKNKI*iiti*vfkcfatkinki**kl
Translated Amino Acid sequence (All Frames) 
Frame A:
---YARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVAT
YRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDR
IAKQIYDKKNKI*iiti*vfkcfatkinki**kl


Frame B:
---tqds*rklvvfksqngmispklpptenshqptqigfttelpplpvkftsvvvmvlqp
teefsvvtvetvsdqitlpmsmvetsviv*nnykt*kslkptlskvvvpsllpaveiste
spsksmtkktksk*srfkylnvlqqrltkynkn*


Frame C:
---rkilkenwscsnpkme*yrqnchlqrtptnqprldllqnchpcp*slhpww*wccnl
qksfrw*p*krcqtkslcrcqwwkhpllfktitklksh*nrrcqrwsyhhcyrp*rsrqn
rqanl*qkkqnlnnhdlsi*mfcnkd*qniikt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI124 (VSI124Q) /CSM/VS/VSI1-A/VSI124Q.Seq.d/                        854   0.0
VSH112 (VSH112Q) /CSM/VS/VSH1-A/VSH112Q.Seq.d/                        854   0.0
VSG523 (VSG523Q) /CSM/VS/VSG5-A/VSG523Q.Seq.d/                        854   0.0
VSG304 (VSG304Q) /CSM/VS/VSG3-A/VSG304Q.Seq.d/                        854   0.0
VSF788 (VSF788Q) /CSM/VS/VSF7-D/VSF788Q.Seq.d/                        854   0.0
VSF257 (VSF257Q) /CSM/VS/VSF2-C/VSF257Q.Seq.d/                        854   0.0
VSE706 (VSE706Q) /CSM/VS/VSE7-A/VSE706Q.Seq.d/                        854   0.0
VSD647 (VSD647Q) /CSM/VS/VSD6-B/VSD647Q.Seq.d/                        854   0.0
VSD476 (VSD476Q) /CSM/VS/VSD4-D/VSD476Q.Seq.d/                        854   0.0
VSC609 (VSC609Q) /CSM/VS/VSC6-A/VSC609Q.Seq.d/                        854   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034809) Dictyostelium discoideum slug cDNA, clone SLE529.      739   0.0    2
(AU262609) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
(BJ413807) Dictyostelium discoideum cDNA clone:ddv17d04, 5' ...   739   0.0    2
(AU033451) Dictyostelium discoideum slug cDNA, clone SLA842.      739   0.0    2
(AU266593) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
(AU266927) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
(AU264364) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
(AU268187) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
(AU262668) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
(AU264097) Dictyostelium discoideum vegetative cDNA clone:VS...   739   0.0    2
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X51) RecName: Full=40S ribosomal protein S19;                     217   1e-55
AM482118_1(AM482118|pid:none) Vitis vinifera contig VV78X156932....   120   1e-26
AC149197_14(AC149197|pid:none) Medicago truncatula clone mth2-33...   118   7e-26
(Q9SGA6) RecName: Full=40S ribosomal protein S19-1;  &AC011664_1...   115   4e-25
(Q9FNP8) RecName: Full=40S ribosomal protein S19-3;  &AB006696_1...   115   6e-25
DQ241845_1(DQ241845|pid:none) Solanum tuberosum clone 186F02 40S...   112   4e-24
AM458569_1(AM458569|pid:none) Vitis vinifera contig VV78X180401....   112   4e-24
EU284825_1(EU284825|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   112   5e-24
EF081977_1(EF081977|pid:none) Picea sitchensis clone WS02724_L19...   111   6e-24
EF575851_1(EF575851|pid:none) Oryza sativa (indica cultivar-grou...   111   6e-24
protein update 2009. 6. 1
PSORT 

 psg: 0.55  gvh: 0.26  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.03
 nuc: 0.19  erl: 0.00  erm: 0.80  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for SLC480 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC480Z
3' end seq. 
>SLC480Z.Seq
----------CTACGCAAGATTCTTAAAGAAAACTGGTCGTGTTCAAATCCCAAAATGGA
ATGATATCGCCAAAACTGCCACCTACAGAGAACTCCCACCAACCAACCCAGATTGGATTT
ACTACAGAATTGCCACCCTTGCCCGTAAAGTTTACATCCGTGGTGGTGATGGTGTTGCAA
CCTACAGAAGAGTTTTCGGTGGTAACCGTAGAAACGGTGTCAGACCAAATCACTTTGCCG
ATGTCAATGGTGGAAACATCCGTTATTGTTTAAAACAATTACAAAACTTAAAAGTCATTG
AAACCGACGCTGTCAAAGGTGGTCGTACCATCACTGCTACCGGCCGTAGAGATCTCGACA
GAATCGCCAAGCAAATCTATGACAAAAAAAACAAAATCTAAATAATCACGATTTAAGTAT
TTAAATGTTTTGCAACAAAGATTAACAAAATATAATAAAAACTAA
Length of 3' end seq. 455
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -