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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC478
Library SL
(Link to library)
Clone ID SLC478
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID SLC478Z
(Link to Original site)
Representative DNA sequence 
>SLC478 (SLC478Q) /CSM/SL/SLC4-D/SLC478Q.Seq.d/
XXXXXXXXXXAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAAT
GTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTA
AAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCT
CATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTG
TTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTAC
ATTGTGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAGTTCCAGTAT
GTTATTCCACTAATCCATTATTAGATGGTGGTCATGGTTTTATTTAAAGA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---RCPPRHECRVNHFGEECCVKVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCS
LRCPPKHECRINHFGEECCVKSRNDCLTCEDLNCERKGLHCAMKTVPIDKENCCEKVPVC
YSTNPLLDGGHGFI*r
Translated Amino Acid sequence (All Frames) 
Frame A:
---RCPPRHECRVNHFGEECCVKVHHDKCSLRCPPGHECKVDQHGKECCVVAHRPPPKCS
LRCPPKHECRINHFGEECCVKSRNDCLTCEDLNCERKGLHCAMKTVPIDKENCCEKVPVC
YSTNPLLDGGHGFI*r


Frame B:
---dvhqdmnvesttlvknvvlkfttinvh*dvhqamnvklinmeknvallpidhhqnah
*dvhqnmnvesitlvknavlkvemiv*lvkt*tvkekvyivp*klyqlikkivvkkfqyv
iplihy*mvvmvlfk


Frame C:
---mstkt*m*sqplw*rmlc*sspr*mfiemstrp*m*s*stwkrmlrccp*tttkmli
kmstkt*m*nqslw*rmlc*k*k*lfnl*rpkl*kkrftlchenctn**rkll*ksssml
fh*siirwwswfylk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK624 (SLK624Q) /CSM/SL/SLK6-A/SLK624Q.Seq.d/                        793   0.0
SLK544 (SLK544Q) /CSM/SL/SLK5-B/SLK544Q.Seq.d/                        793   0.0
SLI849 (SLI849Q) /CSM/SL/SLI8-C/SLI849Q.Seq.d/                        793   0.0
SLI769 (SLI769Q) /CSM/SL/SLI7-C/SLI769Q.Seq.d/                        793   0.0
SLI640 (SLI640Q) /CSM/SL/SLI6-B/SLI640Q.Seq.d/                        793   0.0
SLH866 (SLH866Q) /CSM/SL/SLH8-C/SLH866Q.Seq.d/                        793   0.0
SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        793   0.0
SLG176 (SLG176Q) /CSM/SL/SLG1-D/SLG176Q.Seq.d/                        793   0.0
SLG163 (SLG163Q) /CSM/SL/SLG1-C/SLG163Q.Seq.d/                        793   0.0
SLE838 (SLE838Q) /CSM/SL/SLE8-B/SLE838Q.Seq.d/                        793   0.0
own update 2002. 6. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U25144) Dictyostelium discoideum spore coat protein SP87 (P...   793   0.0    1
(AU060605) Dictyostelium discoideum slug cDNA, clone SLK624.      793   0.0    1
(AU054070) Dictyostelium discoideum slug cDNA, clone SLK544.      793   0.0    1
(AU053531) Dictyostelium discoideum slug cDNA, clone SLI849.      793   0.0    1
(AU053495) Dictyostelium discoideum slug cDNA, clone SLI769.      793   0.0    1
(AU053431) Dictyostelium discoideum slug cDNA, clone SLI640.      793   0.0    1
(AU052492) Dictyostelium discoideum slug cDNA, clone SLD417.      793   0.0    1
(AU039818) Dictyostelium discoideum slug cDNA, clone SLG501.      793   0.0    1
(AU039682) Dictyostelium discoideum slug cDNA, clone SLG176.      793   0.0    1
(AU039675) Dictyostelium discoideum slug cDNA, clone SLG163.      793   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   308   3e-83
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   120   2e-26
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    84   1e-15
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    64   1e-09
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        64   2e-09
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    62   5e-09
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    62   5e-09
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    60   2e-08
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    55   1e-06
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    55   1e-06
protein update 2009. 6. 1
PSORT 

 psg: 0.60  gvh: 0.26  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for SLC478 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC478Z
3' end seq. 
>SLC478Z.Seq
----------AAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAAT
GTTGTGTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTA
AAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCT
CATTAAGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTG
TTAAAAGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTAC
ATTGTGCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGTGAAAAAGTTCCAGTAT
GTTATTCCACTAATCCATTATTAGATGGTGGTCATGGTTTTATTTAAAGA
Length of 3' end seq. 400
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -