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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC477
Library SL
(Link to library)
Clone ID SLC477
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID SLC477Z
(Link to Original site)
Representative DNA sequence 
>SLC477 (SLC477Q) /CSM/SL/SLC4-D/SLC477Q.Seq.d/
XXXXXXXXXXCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGT
TTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGAT
CATTGGGCTTCAATTGGTGTTGTCAACAAAGNTAAGAAAGCCACTGAAGTCGCTTTAGCC
ACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAA
CTTTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCAAATCCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---PLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKXKKATEVALAT
RKRKGLAPEIPDLDKFHEKL*ti*val*vfkysnqiqkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---piilcqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqx*esh*srfsh
qkekrfsprnprs*qiprktlnnlsrtlsfqi**snpkkkkkkkkkkkkkk


Frame B:
---PLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKXKKATEVALAT
RKRKGLAPEIPDLDKFHEKL*ti*val*vfkysnqiqkkkkkkkkkkkkkk


Frame C:
---hyslskliyqy*npsvspliyvptlpvklshnvssiiglqlvlstkxrkplksl*pp
erekv*pqksqiltnstknfkqfkshfefsnivikskkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC477 (SLC477Q) /CSM/SL/SLC4-D/SLC477Q.Seq.d/                        553   e-157
SLB517 (SLB517Q) /CSM/SL/SLB5-A/SLB517Q.Seq.d/                        545   e-154
VSB147 (VSB147Q) /CSM/VS/VSB1-B/VSB147Q.Seq.d/                        543   e-154
VHG546 (VHG546Q) /CSM/VH/VHG5-B/VHG546Q.Seq.d/                        543   e-154
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/                        537   e-152
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/                        537   e-152
VHO504 (VHO504Q) /CSM/VH/VHO5-A/VHO504Q.Seq.d/                        537   e-152
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/                        537   e-152
VHI806 (VHI806Q) /CSM/VH/VHI8-A/VHI806Q.Seq.d/                        537   e-152
VHI247 (VHI247Q) /CSM/VH/VHI2-B/VHI247Q.Seq.d/                        537   e-152
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034560) Dictyostelium discoideum slug cDNA, clone SLC477.      553   e-153  1
(AU033848) Dictyostelium discoideum slug cDNA, clone SLB517.      545   e-151  1
(AU284355) Dictyostelium discoideum gamete cDNA clone:FC-AO1...   543   e-150  1
(AU261850) Dictyostelium discoideum vegetative cDNA clone:VS...   543   e-150  1
(AU054030) Dictyostelium discoideum slug cDNA, clone SLK455.      543   e-150  1
(AU053548) Dictyostelium discoideum slug cDNA, clone SLI884.      543   e-150  1
(AU053363) Dictyostelium discoideum slug cDNA, clone SLI465.      543   e-150  1
(AU053267) Dictyostelium discoideum slug cDNA, clone SLI280.      543   e-150  1
(AU052974) Dictyostelium discoideum slug cDNA, clone SLF417.      543   e-150  1
(AU052524) Dictyostelium discoideum slug cDNA, clone SLD467.      543   e-150  1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q06193) RecName: Full=Elongation factor 2;          Short=EF-2;...   103   2e-21
CP000881_15(CP000881|pid:none) Hemiselmis andersenii chromosome ...    95   8e-19
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro...    94   1e-18
AM494972_25(AM494972|pid:none) Leishmania braziliensis chromosom...    94   2e-18
(P09445) RecName: Full=Elongation factor 2;          Short=EF-2;...    94   2e-18
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...    93   2e-18
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w...    93   2e-18
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet...    93   2e-18
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w...    93   2e-18
M19997_1(M19997|pid:none) Human elongation factor 2 (EF-2) mRNA,...    93   2e-18
protein update 2009. 6. 1
PSORT 

 psg: 0.74  gvh: 0.48  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC477 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC477Z
3' end seq. 
>SLC477Z.Seq
----------CCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGT
TTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGAT
CATTGGGCTTCAATTGGTGTTGTCAACAAAGNTAAGAAAGCCACTGAAGTCGCTTTAGCC
ACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAA
CTTTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCAAATCCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 326
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -