SLC474
Library SL
(Link to library)
Clone ID SLC474
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01121-1
Original site URL
Representative seq. ID SLC474Z
(Link to Original site)
Representative DNA sequence
>SLC474 (SLC474Q) /CSM/SL/SLC4-D/SLC474Q.Seq.d/
XXXXXXXXXXCCTCTGGTGAAGCAATTAAATTGGTACCATTTGATCCTCATCTTTCAAAT
CTATTCGAAGGTGAAGAAATTCTATACAGTGTTAGAATGTATTCAGCTGGATTTAGATTC
TTTGCTCCAACTCTCAACGTTTGTTTTCACTATTACTCTCGTCCAAAATCTCCAAAATTC
TGGGAAGATAATAAACAATACTATTTAGATATGCAAAAATCGGTTGAACGTTTAAAATAC
ATCTTACGTTGGCCTTTAGAGAATACTCCTGATCTCTCTGAACCCCAATTTGCTGAAATC
GATAAATATACCATTGCTAATACTCCCATTTTAACTGAATATTTTCAACGTTGGAAAATT
GATGTTGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence
---SGEAIKLVPFDPHLSNLFEGEEILYSVRMYSAGFRFFAPTLNVCFHYYSRPKSPKFW
EDNKQYYLDMQKSVERLKYILRWPLENTPDLSEPQFAEIDKYTIANTPILTEYFQRWKID
VENKKKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
---lw*sn*igti*sssfksirr*rnsiqc*nvfswi*ilcsnsqrlfslllsskiskil
gr**tilfryakig*tfkihltlafreys*sl*tpic*nr*iyhc*yshfn*ifstlen*
c*k*kkkkkkkkkkkkkkkkkkkkkk


Frame B:
---SGEAIKLVPFDPHLSNLFEGEEILYSVRMYSAGFRFFAPTLNVCFHYYSRPKSPKFW
EDNKQYYLDMQKSVERLKYILRWPLENTPDLSEPQFAEIDKYTIANTPILTEYFQRWKID
VENKKKKKKKKKKKKKKKKKKKKKKK


Frame C:
---lvkqlnwyhlilifqiyskvkkfytvleciqldldsllqlstfvftitlvqnlqnsg
kiinnti*icknrlnv*ntsyvgl*rillislnpnllksinipllilpf*lnifnvgklm
lkikkkkkkkkkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC474 (SLC474Q) /CSM/SL/SLC4-D/SLC474Q.Seq.d/ 718 0.0
SSM226 (SSM226Q) /CSM/SS/SSM2-B/SSM226Q.Seq.d/ 694 0.0
SLF365 (SLF365Q) /CSM/SL/SLF3-C/SLF365Q.Seq.d/ 694 0.0
SFE430 (SFE430Q) /CSM/SF/SFE4-B/SFE430Q.Seq.d/ 694 0.0
AFN357 (AFN357Q) /CSM/AF/AFN3-C/AFN357Q.Seq.d/ 694 0.0
AFM626 (AFM626Q) /CSM/AF/AFM6-B/AFM626Q.Seq.d/ 694 0.0
AFH874 (AFH874Q) /CSM/AF/AFH8-D/AFH874Q.Seq.d/ 694 0.0
SLE662 (SLE662Q) /CSM/SL/SLE6-C/SLE662Q.Seq.d/ 682 0.0
AFO339 (AFO339Q) /CSM/AF/AFO3-B/AFO339Q.Seq.d/ 666 0.0
SLF147 (SLF147Q) /CSM/SL/SLF1-B/SLF147Q.Seq.d/ 646 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034559) Dictyostelium discoideum slug cDNA, clone SLC474. 718 0.0 1
(AF509501) Dictyostelium discoideum putative polypeptide Glc... 694 0.0 1
(AU052946) Dictyostelium discoideum slug cDNA, clone SLF365. 694 0.0 1
(AU038975) Dictyostelium discoideum slug cDNA, clone SSM226. 694 0.0 1
(BJ400241) Dictyostelium discoideum cDNA clone:dds9l08, 3' e... 694 0.0 1
(BJ347573) Dictyostelium discoideum cDNA clone:dda27b15, 3' ... 694 0.0 1
(BJ347149) Dictyostelium discoideum cDNA clone:dda26c08, 3' ... 694 0.0 1
(BJ343662) Dictyostelium discoideum cDNA clone:dda16d20, 3' ... 694 0.0 1
(AU034901) Dictyostelium discoideum slug cDNA, clone SLE662. 682 0.0 1
(BJ345899) Dictyostelium discoideum cDNA clone:dda29n09, 3' ... 613 0.0 2
dna update 2009. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF509501_1(AF509501|pid:none) Dictyostelium discoideum putative ... 251 5e-66
FJ168556_15(FJ168556|pid:none) Bodo saltans clone fosmid 93E01, ... 84 1e-15
CP000078_25(CP000078|pid:none) Leishmania major strain Friedlin ... 81 1e-14
AM502220_71(AM502220|pid:none) Leishmania infantum chromosome 2. 80 2e-14
AC008031_11(AC008031|pid:none) Trypanosoma brucei chromosome 2 c... 74 1e-12
EU599318_1(EU599318|pid:none) Trypanosoma cruzi strain CL Brener... 66 3e-10
AM494954_113(AM494954|pid:none) Leishmania braziliensis chromoso... 62 8e-09
AC091655_22(AC091655|pid:none) Trypanosoma brucei chromosome 5 c... 60 2e-08
AM502235_115(AM502235|pid:none) Leishmania infantum chromosome 17. 60 2e-08
(Q8T1C6) RecName: Full=[Skp1-protein]-hydroxyproline N-acetylglu... 57 2e-07
protein update 2009. 1.21
PSORT

psg: 0.75 gvh: 0.35 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.05
nuc: 1.67 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SLC474 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC474Z
3' end seq.
>SLC474Z.Seq
----------CCTCTGGTGAAGCAATTAAATTGGTACCATTTGATCCTCATCTTTCAAAT
CTATTCGAAGGTGAAGAAATTCTATACAGTGTTAGAATGTATTCAGCTGGATTTAGATTC
TTTGCTCCAACTCTCAACGTTTGTTTTCACTATTACTCTCGTCCAAAATCTCCAAAATTC
TGGGAAGATAATAAACAATACTATTTAGATATGCAAAAATCGGTTGAACGTTTAAAATAC
ATCTTACGTTGGCCTTTAGAGAATACTCCTGATCTCTCTGAACCCCAATTTGCTGAAATC
GATAAATATACCATTGCTAATACTCCCATTTTAACTGAATATTTTCAACGTTGGAAAATT
GATGTTGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 431
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -