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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC470
Library SL
(Link to library)
Clone ID SLC470
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15735-1
Original site URL
Representative seq. ID SLC470Z
(Link to Original site)
Representative DNA sequence 
>SLC470 (SLC470Q) /CSM/SL/SLC4-C/SLC470Q.Seq.d/
XXXXXXXXXXAACACCATTGGTGATAAAGATAAGATCGGTGGTAAAATCGAATCAGATGA
TAAAGAAACCATTGAAACCGCTATCTCTGATGCCCTTTCTTGGTTGGATGTTAACTCCTC
TGCCGAAAAAGAAGAATTTGATGAACAATACAAAATCCTTGAAAAGATCGTTCAACCAAT
CTTCTCTAAATTATATGGTGCTGCTGGTGGTTCCCCAAATGGCGCTGGTGAAGATATGCC
AAACCATGATGAACTTTAAACGCAATTTTCAAATTTTTTAAAAAAAAAAGTATAGATTTT
AAAAAAAAAATAAAAAATAAAATAAAAAAAAAGAATTAGAAGTCGCTAGAAAAGGTTTAA
GTGTTATTAGAAAGAAACAATATGACGAAAATCAAT
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---TPLVIKIRSVVKSNQMIKKPLKPLSLMPFLGWMLTPLPKKKNLMNNTKSLKRSFNQS
SLNYMVLLVVPQMALVKICQTMMNFKRNFQIF*kkkyrf*kknkk*nkkkelevarkgls
virkkqydenq
Translated Amino Acid sequence (All Frames) 
Frame A:
---TPLVIKIRSVVKSNQMIKKPLKPLSLMPFLGWMLTPLPKKKNLMNNTKSLKRSFNQS
SLNYMVLLVVPQMALVKICQTMMNFKRNFQIF*kkkyrf*kknkk*nkkkelevarkgls
virkkqydenq


Frame B:
---hhw**r*drw*nrir**rnh*nryl*cpflvgc*llcrkrri**tiqnp*kdrstnl
l*iiwccwwfpkwrw*ryakp**tlnaifkffkkksidfkkkiknkikkkn*kslekv*v
llernnmtkin


Frame C:
---tigdkdkiggkiesddketietaisdalswldvnssaekeefdeqykilekivqpif
sklygaaggspngagedmpnhdel*tqfsnflkkkv*ilkkk*kik*kkrirsr*krfkc
y*keti*rks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC175 (VSC175Q) /CSM/VS/VSC1-D/VSC175Q.Seq.d/                        533   e-151
SLF229 (SLF229Q) /CSM/SL/SLF2-B/SLF229Q.Seq.d/                        533   e-151
SLC470 (SLC470Q) /CSM/SL/SLC4-C/SLC470Q.Seq.d/                        533   e-151
SLA237 (SLA237Q) /CSM/SL/SLA2-B/SLA237Q.Seq.d/                        533   e-151
FCL-AD17 (FCL-AD17Q) /CSM/FCL/FCL-AD/FCL-AD17Q.Seq.d/                 533   e-151
AFM728 (AFM728Q) /CSM/AF/AFM7-B/AFM728Q.Seq.d/                        533   e-151
AFM580 (AFM580Q) /CSM/AF/AFM5-D/AFM580Q.Seq.d/                        533   e-151
AFM366 (AFM366Q) /CSM/AF/AFM3-C/AFM366Q.Seq.d/                        533   e-151
SLC413 (SLC413Q) /CSM/SL/SLC4-A/SLC413Q.Seq.d/                        529   e-149
VHK851 (VHK851Q) /CSM/VH/VHK8-C/VHK851Q.Seq.d/                        527   e-149
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034558) Dictyostelium discoideum slug cDNA, clone SLC470.      533   e-178  2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...   533   e-147  1
(AU262379) Dictyostelium discoideum vegetative cDNA clone:VS...   533   e-147  1
(AU052865) Dictyostelium discoideum slug cDNA, clone SLF229.      533   e-147  1
(C25542) Dictyostelium discoideum slug cDNA, clone SLA237.        533   e-147  1
(BJ347384) Dictyostelium discoideum cDNA clone:dda26o19, 3' ...   533   e-147  1
(BJ347176) Dictyostelium discoideum cDNA clone:dda26h07, 3' ...   533   e-147  1
(BJ346917) Dictyostelium discoideum cDNA clone:dda25d17, 3' ...   533   e-147  1
(AU034539) Dictyostelium discoideum slug cDNA, clone SLC413.      529   e-146  1
(BJ443314) Dictyostelium discoideum cDNA clone:ddv52f14, 3' ...   527   e-146  1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB790452_1(FB790452|pid:none) Sequence 9725 from Patent WO200803...    94   1e-18
(Q03685) RecName: Full=Luminal-binding protein 5;          Short...    92   5e-18
AJ295617_1(AJ295617|pid:none) Corylus avellana mRNA for putative...    91   9e-18
EF085162_1(EF085162|pid:none) Picea sitchensis clone WS0293_P08 ...    91   1e-17
FB790470_1(FB790470|pid:none) Sequence 9743 from Patent WO200803...    91   1e-17
BT045516_1(BT045516|pid:none) Salmo salar clone ssal-rgf-523-306...    91   2e-17
AB196459_1(AB196459|pid:none) Oncorhynchus mykiss GRP78 mRNA for...    90   2e-17
DQ662232_1(DQ662232|pid:none) Paralichthys olivaceus glucose-reg...    90   3e-17
(P49118) RecName: Full=Luminal-binding protein;          Short=B...    90   3e-17
AB232154_1(AB232154|pid:none) Macaca fuscata Bip mRNA for immuno...    89   6e-17
protein update 2009. 6. 1
PSORT 

 psg: 0.67  gvh: 0.39  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.57  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic

>> prediction for SLC470 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC470Z
3' end seq. 
>SLC470Z.Seq
----------AACACCATTGGTGATAAAGATAAGATCGGTGGTAAAATCGAATCAGATGA
TAAAGAAACCATTGAAACCGCTATCTCTGATGCCCTTTCTTGGTTGGATGTTAACTCCTC
TGCCGAAAAAGAAGAATTTGATGAACAATACAAAATCCTTGAAAAGATCGTTCAACCAAT
CTTCTCTAAATTATATGGTGCTGCTGGTGGTTCCCCAAATGGCGCTGGTGAAGATATGCC
AAACCATGATGAACTTTAAACGCAATTTTCAAATTTTTTAAAAAAAAAAGTATAGATTTT
AAAAAAAAAATAAAAAATAAAATAAAAAAAAAGAATTAGAAGTCGCTAGAAAAGGTTTAA
GTGTTATTAGAAAGAAACAATATGACGAAAATCAAT
Length of 3' end seq. 386
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -