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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC469
Library SL
(Link to library)
Clone ID SLC469
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16584-1
Original site URL
Representative seq. ID SLC469P
(Link to Original site)
Representative DNA sequence 
>SLC469 (SLC469Q) /CSM/SL/SLC4-C/SLC469Q.Seq.d/
AAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAGTTGCTAATCTTT
TAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAATTAATTTTTCCAT
TTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTGATAAAACCAATG
ATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTGGTATTAAATGTG
CAACAATTACACCAGACGAAGCACGTGTCACAGAGTTTGGATTGAAGGAGATGTGGAAAT
CACCAAATGGTACCATTCGTAATACATTGGGTGGCACATTATTTAGAGAGCCAATTGTTT
GTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATAAATCTATAGTTATTGGTCGTCATG
CATTTGGTGACCAATACAGAGCCACTGATTTCGTAGTAAAGGGAGCTGGCAAGTTGGAGT
TAACCTACACACCAGCCGACGGCAGTGCACCACAAAAATTCCAAGTCTTTGACTTCCCAT
CCGATGGTGGGTGTAGCCTTGGGAATGTATAATACCGACGCCTCAATCAAAGAGTTTGCC
TACGCCTGCTTCAACTTTAGTTTGGACAAAAAGTGGCCATTATATCTCTCCACAAAGAAC
ACAATTCTCAAGAGATXXXXXXXXXXTTGGACTCGTGGTCTTGAATATCGTGCTAAATTA
GATAACAATGATAAATTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCT
GTTGAATCTGGTTTCATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAAT
GTAAAACGTACAGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTT
GTTAGCAAATTAACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACT
ACTACTCTACTTCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCT
CATTTCTTTTTTTTTATGTTCAAAATTAGTAGTAATAAAATAAAATTGTTATAATTATCC
CTT
sequence update 1999. 2.19
Translated Amino Acid sequence 
kknhikw*kkslfqiqllif*vmnkpelfgi*lkrn*ffhf*i*klkpmi*elsivikpm
iklqlmqpmqlrd*klvlnvqqlhqtkhvsqsld*rrcgnhqmvpfvihwvahylesqlf
vrmshvwspvginl*llvvmhlvtnteplis**relasws*PTHQPTAVHHKNSKSLTSH
PMVGVALGMYNTDASIKEFAYACFNFSLDKKWPLYLSTKNTILKR---

---WTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDY
LNTEEYINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshffffm
fkissnkikll*lsl
Translated Amino Acid sequence (All Frames) 
Frame A:
kknhikw*kkslfqiqllif*vmnkpelfgi*lkrn*ffhf*i*klkpmi*elsivikpm
iklqlmqpmqlrd*klvlnvqqlhqtkhvsqsld*rrcgnhqmvpfvihwvahylesqlf
vrmshvwspvginl*llvvmhlvtnteplis**relasws*PTHQPTAVHHKNSKSLTSH
PMVGVALGMYNTDASIKEFAYACFNFSLDKKWPLYLSTKNTILKR---

---ldsws*isc*ir*q**iikilscs*sflyrcc*iwfhd*rfsnlc*rfs*kcktyrl
lky*riy**gcritc*qincivrnfinlthyyyhyystslfrvavyhsffsikisflffy
vqn****nkiviiip

Frame B:
kkii*ngrknhcfkssc*sfr**tnqsylgfn*keinfsifrfks*nl*frn*vs**nq*
ssyn*csqcn*eikswy*mcnnytrrstchrvwiegdveitkwyhs*yigwhii*rancl
*ecptfghlle*iysywssciw*piqsh*frskgswqvgvnlhtsrrqcttkipsl*lpi
rwwv*pweciiptpqskslptpastlvwtksghyispqrtqfsrd---

---WTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDY
LNTEEYINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshffffm
fkissnkikll*lsl

Frame C:
kksykmvekiivsnpvanllgdeqtrviwdliekklifpfldlkvetydlgieyrdktnd
qvtidaanaikrlkvgikcatitpdearvtefglkemwkspngtirntlggtlfrepivc
knvprlvtcwnksivigrhafgdqyratdfvvkgagkleltytpadgsapqkfqvfdfps
dggcslgnv*yrrlnqrvclrllql*fgqkvaiislhkehnsqe---

---glvvlnivln*itminy*nsvmllklpvsmllnlvs*lki*qfvlkvqlkm*nvqtt
*ilknilirlpnyllan*lhckkfyksyslllplllyfiisccglsfiflhknlisfflc
sklvvik*ncynyp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC469 (SLC469Q) /CSM/SL/SLC4-C/SLC469Q.Seq.d/                       1788   0.0
VFL180 (VFL180Q) /CSM/VF/VFL1-D/VFL180Q.Seq.d/                       1205   0.0
VFL349 (VFL349Q) /CSM/VF/VFL3-C/VFL349Q.Seq.d/                       1201   0.0
VFM105 (VFM105Q) /CSM/VF/VFM1-A/VFM105Q.Seq.d/                       1185   0.0
VFJ466 (VFJ466Q) /CSM/VF/VFJ4-C/VFJ466Q.Seq.d/                       1179   0.0
VFM756 (VFM756Q) /CSM/VF/VFM7-C/VFM756Q.Seq.d/                       1170   0.0
VFI433 (VFI433Q) /CSM/VF/VFI4-B/VFI433Q.Seq.d/                       1150   0.0
VSJ261 (VSJ261Q) /CSM/VS/VSJ2-C/VSJ261Q.Seq.d/                       1138   0.0
AFC669 (AFC669Q) /CSM/AF/AFC6-C/AFC669Q.Seq.d/                       1130   0.0
VFF796 (VFF796Q) /CSM/VF/VFF7-D/VFF796Q.Seq.d/                       1126   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269659) Dictyostelium discoideum vegetative cDNA clone:VS...  1074   0.0    2
(BJ415848) Dictyostelium discoideum cDNA clone:ddv23o19, 5' ...  1074   0.0    2
(BJ415717) Dictyostelium discoideum cDNA clone:ddv23b13, 5' ...  1074   0.0    2
(BJ410551) Dictyostelium discoideum cDNA clone:ddv12p23, 5' ...  1074   0.0    2
(BJ391053) Dictyostelium discoideum cDNA clone:dds14i20, 5' ...  1074   0.0    2
(BJ416528) Dictyostelium discoideum cDNA clone:ddv26p13, 5' ...  1068   0.0    2
(BJ416046) Dictyostelium discoideum cDNA clone:ddv24o17, 5' ...  1068   0.0    2
(BJ410536) Dictyostelium discoideum cDNA clone:ddv12l22, 5' ...  1068   0.0    2
(BJ412624) Dictyostelium discoideum cDNA clone:ddv9c12, 5' e...  1066   0.0    2
(BJ410537) Dictyostelium discoideum cDNA clone:ddv12l23, 5' ...  1066   0.0    2
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JR3) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm...   368   e-121
CP000481_386(CP000481|pid:none) Acidothermus cellulolyticus 11B ...   250   9e-78
DQ465384_1(DQ465384|pid:none) Oreochromis mossambicus clone SSH ...   246   3e-77
CP000084_639(CP000084|pid:none) Candidatus Pelagibacter ubique H...   246   3e-77
BX842656_132(BX842656|pid:none) Bdellovibrio bacteriovorus compl...   245   6e-77
BT080533_1(BT080533|pid:none) Caligus clemensi clone ccle-evs-50...   240   7e-77
BC082651_1(BC082651|pid:none) Xenopus laevis hypothetical LOC494...   243   9e-77
(Q75JR2) RecName: Full=Isocitrate dehydrogenase [NADP], mitochon...   243   1e-76
BC074702_1(BC074702|pid:none) Xenopus tropicalis MGC69225 protei...   243   2e-76
BT077406_1(BT077406|pid:none) Lepeophtheirus salmonis clone lsal...   241   2e-76
protein update 2009. 6. 1
PSORT 

 psg: 0.64  gvh: 0.50  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC469 is cyt
5' end seq. ID SLC469F
5' end seq. 
>SLC469F.Seq
AAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAGTTGCTAATCTTT
TAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAATTAATTTTTCCAT
TTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTGATAAAACCAATG
ATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTGGTATTAAATGTG
CAACAATTACACCAGACGAAGCACGTGTCACAGAGTTTGGATTGAAGGAGATGTGGAAAT
CACCAAATGGTACCATTCGTAATACATTGGGTGGCACATTATTTAGAGAGCCAATTGTTT
GTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATAAATCTATAGTTATTGGTCGTCATG
CATTTGGTGACCAATACAGAGCCACTGATTTCGTAGTAAAGGGAGCTGGCAAGTTGGAGT
TAACCTACACACCAGCCGACGGCAGTGCACCACAAAAATTCCAAGTCTTTGACTTCCCAT
CCGATGGTGGGTGTAGCCTTGGGAATGTATAATACCGACGCCTCAATCAAAGAGTTTGCC
TACGCCTGCTTCAACTTTAGTTTGGACAAAAAGTGGCCATTATATCTCTCCACAAAGAAC
ACAATTCTCAAGAGAT----------
Length of 5' end seq. 676
3' end seq. ID SLC469Z
3' end seq. 
>SLC469Z.Seq
----------TTGGACTCGTGGTCTTGAATATCGTGCTAAATTAGATAACAATGATAAAT
TATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCTGTTGAATCTGGTTTCA
TGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAATGTAAAACGTACAGACT
ACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATTAACTG
CATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTACTACTCTACTTCATT
ATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTTTTTTA
TGTTCAAAATTAGTAGTAATAAAATAAAATTGTTATAATTATCCCTT
Length of 3' end seq. 397
Connected seq. ID SLC469P
Connected seq. 
>SLC469P.Seq
AAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAGTTGCTAATCTTT
TAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAATTAATTTTTCCAT
TTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTGATAAAACCAATG
ATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTGGTATTAAATGTG
CAACAATTACACCAGACGAAGCACGTGTCACAGAGTTTGGATTGAAGGAGATGTGGAAAT
CACCAAATGGTACCATTCGTAATACATTGGGTGGCACATTATTTAGAGAGCCAATTGTTT
GTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATAAATCTATAGTTATTGGTCGTCATG
CATTTGGTGACCAATACAGAGCCACTGATTTCGTAGTAAAGGGAGCTGGCAAGTTGGAGT
TAACCTACACACCAGCCGACGGCAGTGCACCACAAAAATTCCAAGTCTTTGACTTCCCAT
CCGATGGTGGGTGTAGCCTTGGGAATGTATAATACCGACGCCTCAATCAAAGAGTTTGCC
TACGCCTGCTTCAACTTTAGTTTGGACAAAAAGTGGCCATTATATCTCTCCACAAAGAAC
ACAATTCTCAAGAGAT----------TTGGACTCGTGGTCTTGAATATCGTGCTAAATTA
GATAACAATGATAAATTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCT
GTTGAATCTGGTTTCATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAAT
GTAAAACGTACAGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTT
GTTAGCAAATTAACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACT
ACTACTCTACTTCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCT
CATTTCTTTTTTTTTATGTTCAAAATTAGTAGTAATAAAATAAAATTGTTATAATTATCC
CTT
Length of connected seq. 1073
Full length Seq ID -
Full length Seq. -
Length of full length seq. -