NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC466
Library SL
(Link to library)
Clone ID SLC466
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SLC466Z
(Link to Original site)
Representative DNA sequence 
>SLC466 (SLC466Q) /CSM/SL/SLC4-C/SLC466Q.Seq.d/
XXXXXXXXXXCCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGA
ATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCG
TGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGATTATGATGGCCGTGA
CGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGATGA
TGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGATTG
GGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGATGAATG
GGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATATTAATACAAATAATTT
TTTAAAAAAAAAAAAAG
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---DFHRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDG
DYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQDANDEWD
Y*ainflkknnnnintnnflkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---qisidvlkdvvvs*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmvimmavt
vtmmvimmvimmmtiimvmmtmimigtmimigvmigimigtmkmviigmmmtskmqmmng
tikplif*kkiiiiliqiif*kkkk


Frame B:
---rfp*mc*ktwwylkl*i*stkttkip*lg*k*k**s*l**s*l****i*w*l*wp*r
*l*w*l*w*l***qllw***l***lgq***lg**lg**lgq*rw**le***lprck**mg
llsh*ffkkk***y*yk*ffkkkk


Frame C:
---DFHRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDG
DYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGNDWDNDWDNEDGDNWNDDDFQDANDEWD
Y*ainflkknnnnintnnflkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK887 (SLK887Q) /CSM/SL/SLK8-D/SLK887Q.Seq.d/                        278   7e-74
SLJ765 (SLJ765Q) /CSM/SL/SLJ7-C/SLJ765Q.Seq.d/                        278   7e-74
SLJ631 (SLJ631Q) /CSM/SL/SLJ6-B/SLJ631Q.Seq.d/                        278   7e-74
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        278   7e-74
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        278   7e-74
SLI663 (SLI663Q) /CSM/SL/SLI6-C/SLI663Q.Seq.d/                        278   7e-74
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/                        278   7e-74
SLI315 (SLI315Q) /CSM/SL/SLI3-A/SLI315Q.Seq.d/                        278   7e-74
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        278   7e-74
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        278   7e-74
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ344855) Dictyostelium discoideum cDNA clone:dda20p18, 3' ...   176   2e-77  2
(AU034556) Dictyostelium discoideum slug cDNA, clone SLC466.      176   2e-77  2
(AU033496) Dictyostelium discoideum slug cDNA, clone SLB101.      176   2e-77  2
(AU039550) Dictyostelium discoideum slug cDNA, clone SLE734.      176   2e-77  2
(AU033521) Dictyostelium discoideum slug cDNA, clone SLB126.      176   2e-77  2
(AU033891) Dictyostelium discoideum slug cDNA, clone SLB575.      176   2e-77  2
(AU053493) Dictyostelium discoideum slug cDNA, clone SLI767.      176   2e-77  2
(AU052922) Dictyostelium discoideum slug cDNA, clone SLF326.      176   2e-77  2
(AU052923) Dictyostelium discoideum slug cDNA, clone SLF327.      176   2e-77  2
(AU034267) Dictyostelium discoideum slug cDNA, clone SLC347.      176   2e-77  2
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    74   2e-12
protein update 2009. 1.21
PSORT 

 psg: 0.82  gvh: 0.29  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLC466 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC466Z
3' end seq. 
>SLC466Z.Seq
----------CCAGATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGA
ATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCG
TGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGATTATGATGGCCGTGA
CGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGACAATTATTATGGTGATGA
TGACTATGATAATGATTGGGACAATGATAATGATTGGGGTAATGATTGGGATAATGATTG
GGACAATGAAGATGGTGATAATTGGAATGATGATGACTTCCAAGATGCAAATGATGAATG
GGACTATTAAGCCATTAATTTTTTAAAAAAAAATAATAATAATATTAATACAAATAATTT
TTTAAAAAAAAAAAAAG
Length of 3' end seq. 427
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -