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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC465
Library SL
(Link to library)
Clone ID SLC465
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14177-1
Original site URL
Representative seq. ID SLC465P
(Link to Original site)
Representative DNA sequence 
>SLC465 (SLC465Q) /CSM/SL/SLC4-C/SLC465Q.Seq.d/
CGTTAACAGATTTTAATATTACTAATATTGTAGAAAATGATTTTAAATAAAGTAGCAAAA
TGTTATGGTAAACAAATTGGATTTTTTGGTAATAAAACCACTCAATTTATAAAACCAAAT
CAAACTATTTTTTTAATTGGTGGAACAAAGAGATTATTTACAACTCAACAACAACAATCA
CCAAAAAAAGAAGAACCAAAATCTGAACAACAAAAAAAAGTAGAGGATAAAACTGAAGAA
AAAGAAAAAGAAAAAGATGAAGAAGAAAATGAAAATGAAAAAGAAAAAGAAAATGAAGAT
GGAGAAGGTCAAAAAAAGAAATCTAAATTCAATGTACCACCAATTGTCACATCTGTAACC
TCAACTTTCTTTGCAGGTGTACTTGTTGCATCAACATTTGGTTATTTAACTTATAACTTT
AAAAAGGATATTTCTGAAGAAGAAAGATATAGATTAAATTCAGTAGAATCTAAATTTTAT
CATTCTATTGCCGAACCATTTAGAGAATTTTTTGATAATATTTTTGAAAATTTAAGAACA
AAATATGAATTCTTTGATATGTTATTTGGACCAGGTAAAATTCATAAAGTTTTACCACCA
CCACTTCCAGGTGGTAAAAAATACACACTCGTAATTGATATCGATGCTCTTACTGAAATT
ACCAAAACTTCTAAATATCCAACCCTCTACAAAAGAGCAGGTTTGATTTCATCTTAGATC
ATTTAXXXXXXXXXXGATACAAATGGTAAATATTTCACTGGTTTACTTTATCCAGAAACT
GGTATTAAAGAAAGAAATCAATTTAGTAAAAAGATTGAAATGTTAGATAGAGATCCATCA
AAGGTTATCTTTATTGATGCCGCATCACCATATGATCATCCAAATGTTATCAATATTGGT
AAATTCAAATCAAACTCTAAAGATAAACTTTTAATTGAATTATTACCAGTACTTGAAAGT
TTCTCCAGAAAGAATCTTGATGATGTCAGACCTGAAATCTCTCAATTCCAAAATATTTCA
AAACAATCATTAACTAAAAATTTGGAAGATTATCTTTCAACTCATAATATTAATAGTCGT
CAAAAAAAATAAATTAAATTAAATAAAATAAAAATAAAATAAAATATA
sequence update 1999. 2.19
Translated Amino Acid sequence 
ltdfnitnivendfk*sskmlw*tnwifw**nhsiyktksnyffnwwnkeiiynstttit
kkrrtki*ttkksrg*n*rkrkrkr*rrk*k*krkrk*rwrrskkei*iqcttnchicnl
nflcrctcciniwlfnl*l*kgyf*rrki*ikfsri*ilsfycrti*rif**yf*kfknk
i*il*yviwtr*ns*sfttttsrw*kihtrn*yrcsy*nyqnf*ISNPLQKSRFDFILDH
L---

---DTNGKYFTGLLYPETGIKERNQFSKKIEMLDRDPSKVIFIDAASPYDHPNVINIGKF
KSNSKDKLLIELLPVLESFSRKNLDDVRPEISQFQNISKQSLTKNLEDYLSTHNINSRQK
K*iklnkikik*ni
Translated Amino Acid sequence (All Frames) 
Frame A:
r*qilillil*kmilnkvakcygkqigffgnkttqfikpnqtifliggtkrlfttqqqqs
pkkeepkseqqkkvedkteekekekdeeenenekekenedgegqkkkskfnvppivtsvt
stffagvlvastfgyltynfkkdiseeeryrlnsveskfyhsiaepfreffdnifenlrt
kyeffdmlfgpgkihkvlppplpggkkytlvididalteitktskyptlykragliss*i
i---

---DTNGKYFTGLLYPETGIKERNQFSKKIEMLDRDPSKVIFIDAASPYDHPNVINIGKF
KSNSKDKLLIELLPVLESFSRKNLDDVRPEISQFQNISKQSLTKNLEDYLSTHNINSRQK
K*iklnkikik*ni

Frame B:
vnrf*yy*ycrk*f*ik*qnvmvnkldflvikplnl*nqiklff*lveqrdylqlnnnnh
qkkknqnlnnkkk*riklkkkkkkkmkkkmkmkkkkkmkmekvkkrnlnsmyhqlshl*p
qlslqvyllhqhlvi*litlkriflkkkdid*iq*nlnfiillpnhlenfliiflki*eq
nmnslicyldqvkfikfyhhhfqvvknths*lismlllklpkllniqpstkeqv*fhlrs
f---

---iqmvnislvyfiqklvlkkeinlvkrlkc*ieihqrlsllmphhhmiiqmlsilvns
nqtlkinf*lnyyqylkvsperilmmsdlkslnskifqnnh*lkiwkiifqliilivvkk
nkln*ik*k*nki

Frame C:
ltdfnitnivendfk*sskmlw*tnwifw**nhsiyktksnyffnwwnkeiiynstttit
kkrrtki*ttkksrg*n*rkrkrkr*rrk*k*krkrk*rwrrskkei*iqcttnchicnl
nflcrctcciniwlfnl*l*kgyf*rrki*ikfsri*ilsfycrti*rif**yf*kfknk
i*il*yviwtr*ns*sfttttsrw*kihtrn*yrcsy*nyqnf*ISNPLQKSRFDFILDH
L---

---ykw*ifhwftlsrnwy*rkksi**kd*nvr*rsikgyly*criti*sskcyqyw*iq
ikl*r*tfn*iitst*kflqkes**cqt*nlsipkyfktiin*kfgrlsfns*y**sskk
in*ik*nknkiky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC465 (SLC465Q) /CSM/SL/SLC4-C/SLC465Q.Seq.d/                       1455   0.0
VSG495 (VSG495Q) /CSM/VS/VSG4-D/VSG495Q.Seq.d/                        787   0.0
VFM724 (VFM724Q) /CSM/VF/VFM7-A/VFM724Q.Seq.d/                        787   0.0
VFK311 (VFK311Q) /CSM/VF/VFK3-A/VFK311Q.Seq.d/                        787   0.0
CFC848 (CFC848Q) /CSM/CF/CFC8-B/CFC848Q.Seq.d/                        787   0.0
VFN518 (VFN518Q) /CSM/VF/VFN5-A/VFN518Q.Seq.d/                        781   0.0
VFC824 (VFC824Q) /CSM/VF/VFC8-A/VFC824Q.Seq.d/                        781   0.0
SFF195 (SFF195Q) /CSM/SF/SFF1-D/SFF195Q.Seq.d/                        781   0.0
VFK851 (VFK851Q) /CSM/VF/VFK8-C/VFK851Q.Seq.d/                        700   0.0
VSJ729 (VSJ729Q) /CSM/VS/VSJ7-B/VSJ729Q.Seq.d/                        686   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435718) Dictyostelium discoideum cDNA clone:ddv28c05, 3' ...   684   0.0    3
(BJ435140) Dictyostelium discoideum cDNA clone:ddv26p05, 3' ...   684   0.0    3
(BJ374093) Dictyostelium discoideum cDNA clone:ddc6p12, 3' e...   684   0.0    3
(BJ347289) Dictyostelium discoideum cDNA clone:dda26m13, 3' ...   668   0.0    3
(BJ430142) Dictyostelium discoideum cDNA clone:ddv6p06, 3' e...   607   0.0    4
(BJ433194) Dictyostelium discoideum cDNA clone:ddv21f03, 3' ...   583   0.0    4
(BJ398307) Dictyostelium discoideum cDNA clone:dds11m23, 3' ...   525   0.0    5
(AU060976) Dictyostelium discoideum slug cDNA, clone SLC465.      801   0.0    3
(BJ399935) Dictyostelium discoideum cDNA clone:dds8i02, 3' e...   668   0.0    3
(BJ428829) Dictyostelium discoideum cDNA clone:ddv1l08, 3' e...   583   0.0    6
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007166_209(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    52   3e-05
AC002304_15(AC002304|pid:none) Genomic sequence for Arabidopsis ...    50   1e-04
AK221878_1(AK221878|pid:none) Arabidopsis thaliana mRNA for hypo...    50   1e-04
AM270139_49(AM270139|pid:none) Aspergillus niger contig An07c022...    50   1e-04
(Q4WI16) RecName: Full=Mitochondrial import inner membrane trans...    50   2e-04
CR954203_454(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    49   4e-04
AM920433_382(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    47   0.001
(O13636) RecName: Full=Mitochondrial import inner membrane trans...    47   0.001
CP000583_460(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    47   0.002
AL022072_21(AL022072|pid:none) S.pombe chromosome II cosmid c8D2.      47   0.002
protein update 2009. 6. 1
PSORT 

 psg: 0.67  gvh: 0.34  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SLC465 is nuc
5' end seq. ID SLC465F
5' end seq. 
>SLC465F.Seq
CGTTAACAGATTTTAATATTACTAATATTGTAGAAAATGATTTTAAATAAAGTAGCAAAA
TGTTATGGTAAACAAATTGGATTTTTTGGTAATAAAACCACTCAATTTATAAAACCAAAT
CAAACTATTTTTTTAATTGGTGGAACAAAGAGATTATTTACAACTCAACAACAACAATCA
CCAAAAAAAGAAGAACCAAAATCTGAACAACAAAAAAAAGTAGAGGATAAAACTGAAGAA
AAAGAAAAAGAAAAAGATGAAGAAGAAAATGAAAATGAAAAAGAAAAAGAAAATGAAGAT
GGAGAAGGTCAAAAAAAGAAATCTAAATTCAATGTACCACCAATTGTCACATCTGTAACC
TCAACTTTCTTTGCAGGTGTACTTGTTGCATCAACATTTGGTTATTTAACTTATAACTTT
AAAAAGGATATTTCTGAAGAAGAAAGATATAGATTAAATTCAGTAGAATCTAAATTTTAT
CATTCTATTGCCGAACCATTTAGAGAATTTTTTGATAATATTTTTGAAAATTTAAGAACA
AAATATGAATTCTTTGATATGTTATTTGGACCAGGTAAAATTCATAAAGTTTTACCACCA
CCACTTCCAGGTGGTAAAAAATACACACTCGTAATTGATATCGATGCTCTTACTGAAATT
ACCAAAACTTCTAAATATCCAACCCTCTACAAAAGAGCAGGTTTGATTTCATCTTAGATC
ATTTA----------
Length of 5' end seq. 725
3' end seq. ID SLC465Z
3' end seq. 
>SLC465Z.Seq
----------GATACAAATGGTAAATATTTCACTGGTTTACTTTATCCAGAAACTGGTAT
TAAAGAAAGAAATCAATTTAGTAAAAAGATTGAAATGTTAGATAGAGATCCATCAAAGGT
TATCTTTATTGATGCCGCATCACCATATGATCATCCAAATGTTATCAATATTGGTAAATT
CAAATCAAACTCTAAAGATAAACTTTTAATTGAATTATTACCAGTACTTGAAAGTTTCTC
CAGAAAGAATCTTGATGATGTCAGACCTGAAATCTCTCAATTCCAAAATATTTCAAAACA
ATCATTAACTAAAAATTTGGAAGATTATCTTTCAACTCATAATATTAATAGTCGTCAAAA
AAAATAAATTAAATTAAATAAAATAAAAATAAAATAAAATATA
Length of 3' end seq. 393
Connected seq. ID SLC465P
Connected seq. 
>SLC465P.Seq
CGTTAACAGATTTTAATATTACTAATATTGTAGAAAATGATTTTAAATAAAGTAGCAAAA
TGTTATGGTAAACAAATTGGATTTTTTGGTAATAAAACCACTCAATTTATAAAACCAAAT
CAAACTATTTTTTTAATTGGTGGAACAAAGAGATTATTTACAACTCAACAACAACAATCA
CCAAAAAAAGAAGAACCAAAATCTGAACAACAAAAAAAAGTAGAGGATAAAACTGAAGAA
AAAGAAAAAGAAAAAGATGAAGAAGAAAATGAAAATGAAAAAGAAAAAGAAAATGAAGAT
GGAGAAGGTCAAAAAAAGAAATCTAAATTCAATGTACCACCAATTGTCACATCTGTAACC
TCAACTTTCTTTGCAGGTGTACTTGTTGCATCAACATTTGGTTATTTAACTTATAACTTT
AAAAAGGATATTTCTGAAGAAGAAAGATATAGATTAAATTCAGTAGAATCTAAATTTTAT
CATTCTATTGCCGAACCATTTAGAGAATTTTTTGATAATATTTTTGAAAATTTAAGAACA
AAATATGAATTCTTTGATATGTTATTTGGACCAGGTAAAATTCATAAAGTTTTACCACCA
CCACTTCCAGGTGGTAAAAAATACACACTCGTAATTGATATCGATGCTCTTACTGAAATT
ACCAAAACTTCTAAATATCCAACCCTCTACAAAAGAGCAGGTTTGATTTCATCTTAGATC
ATTTA----------GATACAAATGGTAAATATTTCACTGGTTTACTTTATCCAGAAACT
GGTATTAAAGAAAGAAATCAATTTAGTAAAAAGATTGAAATGTTAGATAGAGATCCATCA
AAGGTTATCTTTATTGATGCCGCATCACCATATGATCATCCAAATGTTATCAATATTGGT
AAATTCAAATCAAACTCTAAAGATAAACTTTTAATTGAATTATTACCAGTACTTGAAAGT
TTCTCCAGAAAGAATCTTGATGATGTCAGACCTGAAATCTCTCAATTCCAAAATATTTCA
AAACAATCATTAACTAAAAATTTGGAAGATTATCTTTCAACTCATAATATTAATAGTCGT
CAAAAAAAATAAATTAAATTAAATAAAATAAAAATAAAATAAAATATA
Length of connected seq. 1118
Full length Seq ID -
Full length Seq. -
Length of full length seq. -