SLC464
Library SL
(Link to library)
Clone ID SLC464
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00917-1
Original site URL
Representative seq. ID SLC464Z
(Link to Original site)
Representative DNA sequence
>SLC464 (SLC464Q) /CSM/SL/SLC4-C/SLC464Q.Seq.d/
XXXXXXXXXXTGTATTTCATTTTCTTAATGATTCCAGTTATCTGATTTATTTCTTTATTA
GCTGCTCATATCTCTGCTGATAGATTTGCAATTGCTAATGTATTCATTCCAATTTTTATT
GTTTTAGGTCTTTTAACTTGTGCATATTGTATTTTTGCATGTTGTGCTTTAGCTGCAGCA
AAGGGACAAGGAATGGAAGATTTCCCAGGTGGTTCACCAACTCAAAATATCGCTTCAATC
ATTAACAGTAGAATGTTAAGACCACAAAAATTCTTGGAAGCTCAACACTTACCAACAACC
AGTACCTCTGTTGGTGTAGAAAATGTTTAATTTTACCAAAATAAAGAGTAAAAAGTTCAC
ATATATATAAAATTTTAAAAACTAAAAATAAAAAAAAAAACTAAAAATAAAAATCA
sequence update 1998. 5. 7
Translated Amino Acid sequence
---yfiflmipvi*FISLLAAHISADRFAIANVFIPIFIVLGLLTCAYCIFACCALAAAK
GQGMEDFPGGSPTQNIASIINSRMLRPQKFLEAQHLPTTSTSVGVENV*fyqnke*kvhi
yikf*klkikkktknkn


Translated Amino Acid sequence (All Frames)
Frame A:
---vfhflndssyliyffiscsylc**icnc*cihsnfycfrsfnlcilyfcmlcfscsk
gtrngrfprwftnskyrfnh*q*nvkttkilgsstltnnqylcwcrkclilpk*rvkssh
iykilktknkkkn*k*ks


Frame B:
---yfiflmipvi*FISLLAAHISADRFAIANVFIPIFIVLGLLTCAYCIFACCALAAAK
GQGMEDFPGGSPTQNIASIINSRMLRPQKFLEAQHLPTTSTSVGVENV*fyqnke*kvhi
yikf*klkikkktknkn


Frame C:
---isfs**fqlsdlfly*llisllidlqllmysfqfllf*vf*lvhivflhvvl*lqqr
dkewkisqvvhqlkislqsltvec*dhknswklntyqqpvpllv*kmfnftkikskkfty
i*nfkn*k*kkklkiki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC464 (SLC464Q) /CSM/SL/SLC4-C/SLC464Q.Seq.d/ 726 0.0
SLD494 (SLD494Q) /CSM/SL/SLD4-D/SLD494Q.Seq.d/ 680 0.0
SFC702 (SFC702Q) /CSM/SF/SFC7-A/SFC702Q.Seq.d/ 678 0.0
VHP144 (VHP144Q) /CSM/VH/VHP1-B/VHP144Q.Seq.d/ 36 0.40
VHJ774 (VHJ774Q) /CSM/VH/VHJ7-D/VHJ774Q.Seq.d/ 36 0.40
VHI252 (VHI252Q) /CSM/VH/VHI2-C/VHI252Q.Seq.d/ 36 0.40
VHD659 (VHD659Q) /CSM/VH/VHD6-C/VHD659Q.Seq.d/ 36 0.40
VHC475 (VHC475Q) /CSM/VH/VHC4-D/VHC475Q.Seq.d/ 36 0.40
VHB709 (VHB709Q) /CSM/VH/VHB7-A/VHB709Q.Seq.d/ 36 0.40
VFN152 (VFN152Q) /CSM/VF/VFN1-C/VFN152Q.Seq.d/ 36 0.40

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034554) Dictyostelium discoideum slug cDNA, clone SLC464. 613 e-171 1
(BJ399441) Dictyostelium discoideum cDNA clone:dds6d01, 3' e... 444 e-160 2
(AU052540) Dictyostelium discoideum slug cDNA, clone SLD494. 567 e-157 1
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 381 e-157 2
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.26 1
(AP006460) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.26 1
(AP005182) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.26 1
(AC094108) Homo sapiens chromosome 5 clone RP11-58B2, comple... 44 0.91 2
(AC027144) Homo sapiens chromosome 12 clone RP11-141I1 map 1... 40 0.96 2
(AC023997) Homo sapiens chromosome 1 clone RP11-201A3 map 1,... 46 1.0 1
dna update 2009. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM167904_1573(AM167904|pid:none) Bordetella avium 197N complete ... 33 2.3
CR940347_871(CR940347|pid:none) Theileria annulata strain Ankara... 33 3.9
BC018231_1(BC018231|pid:none) Mus musculus DnaJ (Hsp40) homolog,... 32 5.1
(P60904) RecName: Full=DnaJ homolog subfamily C member 5; AltNam... 32 5.1
AE017220_519(AE017220|pid:none) Salmonella enterica subsp. enter... 32 5.1
BX571856_661(BX571856|pid:none) Staphylococcus aureus subsp. aur... 32 6.6

protein update 2009. 1.21
PSORT

psg: 0.89 gvh: 0.76 alm: 0.49 top: 0.37 tms: 0.00 mit: 0.18 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: nuclear
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SLC464 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC464Z
3' end seq.
>SLC464Z.Seq
----------TGTATTTCATTTTCTTAATGATTCCAGTTATCTGATTTATTTCTTTATTA
GCTGCTCATATCTCTGCTGATAGATTTGCAATTGCTAATGTATTCATTCCAATTTTTATT
GTTTTAGGTCTTTTAACTTGTGCATATTGTATTTTTGCATGTTGTGCTTTAGCTGCAGCA
AAGGGACAAGGAATGGAAGATTTCCCAGGTGGTTCACCAACTCAAAATATCGCTTCAATC
ATTAACAGTAGAATGTTAAGACCACAAAAATTCTTGGAAGCTCAACACTTACCAACAACC
AGTACCTCTGTTGGTGTAGAAAATGTTTAATTTTACCAAAATAAAGAGTAAAAAGTTCAC
ATATATATAAAATTTTAAAAACTAAAAATAAAAAAAAAAACTAAAAATAAAAATCA
Length of 3' end seq. 406
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -