SLC461
Library SL
(Link to library)
Clone ID SLC461
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLC461Z
(Link to Original site)
Representative DNA sequence
>SLC461 (SLC461Q) /CSM/SL/SLC4-C/SLC461Q.Seq.d/
XXXXXXXXXXCGGTAATGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTG
ATCGTATGAACAAAGAATTAACTGCTTTAGCACCATCAACCATGAAAATTAAAATCATTG
CTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATTTTAGCTTCACTCTCAA
CTTTCCAACAAATGTGGATCTCAAAAGAAGAATATGATGAATCTGGTCCATCAATTGTCC
ACAGAAAATGTTTCTAAATCATGATGAAAGTGCTTCACATAAAAATAATAATAATAATAT
AACAATAATAATATTTAAATGTATAATAAAATTTAATTACTTTTTTTTTAATGGTTGTTG
ATCTTTATCCGACCTTAAAAAAAAAAAAATAAAACC
sequence update 1998. 5. 7
Translated Amino Acid sequence
---GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLST
FQQMWISKEEYDESGPSIVHRKCF*immkvlhikiiiii*q**ylnv**nlitfflmvvd
lyptlkkkk*n


Translated Amino Acid sequence (All Frames)
Frame A:
---GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLST
FQQMWISKEEYDESGPSIVHRKCF*immkvlhikiiiii*q**ylnv**nlitfflmvvd
lyptlkkkk*n


Frame B:
---vmssyqvvqlcsqvlliv*tkn*ll*hhqp*klksllhqnvntlsglvdlf*lhsql
snkcgsqkknmmnlvhqlstenvsks**kcft*k****ynnnni*mynki*llff*wlli
firp*kkknkt


Frame C:
---*crlirwynyvpryc*syeqrincfstinhen*nhcstrt*ilcldwwiyfsftlnf
ptnvdlkrri**iwsincpqkmflnhdesashknnnnnitiiifkciikfnyfffngc*s
lsdlkkkkik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM288 (SSM288Q) /CSM/SS/SSM2-D/SSM288Q.Seq.d/ 531 e-150
SSK713 (SSK713Q) /CSM/SS/SSK7-A/SSK713Q.Seq.d/ 531 e-150
SLI574 (SLI574Q) /CSM/SL/SLI5-D/SLI574Q.Seq.d/ 531 e-150
SLI436 (SLI436Q) /CSM/SL/SLI4-B/SLI436Q.Seq.d/ 531 e-150
SLH881 (SLH881Q) /CSM/SL/SLH8-D/SLH881Q.Seq.d/ 531 e-150
SLH863 (SLH863Q) /CSM/SL/SLH8-C/SLH863Q.Seq.d/ 531 e-150
SLH825 (SLH825Q) /CSM/SL/SLH8-B/SLH825Q.Seq.d/ 531 e-150
SLH701 (SLH701Q) /CSM/SL/SLH7-A/SLH701Q.Seq.d/ 531 e-150
SLH433 (SLH433Q) /CSM/SL/SLH4-B/SLH433Q.Seq.d/ 531 e-150
SLG648 (SLG648Q) /CSM/SL/SLG6-B/SLG648Q.Seq.d/ 531 e-150

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052389) Dictyostelium discoideum slug cDNA, clone SLD238. 531 e-155 2
(AU034553) Dictyostelium discoideum slug cDNA, clone SLC461. 531 e-155 2
(AU052473) Dictyostelium discoideum slug cDNA, clone SLD384. 531 e-155 2
(AU053348) Dictyostelium discoideum slug cDNA, clone SLI436. 531 e-155 2
(AU052949) Dictyostelium discoideum slug cDNA, clone SLF368. 531 e-155 2
(AU033974) Dictyostelium discoideum slug cDNA, clone SLB679. 531 e-155 2
(AU052416) Dictyostelium discoideum slug cDNA, clone SLD280. 531 e-155 2
(AU052488) Dictyostelium discoideum slug cDNA, clone SLD411. 531 e-155 2
(AU039393) Dictyostelium discoideum slug cDNA, clone SLH701. 531 e-155 2
(AU034076) Dictyostelium discoideum slug cDNA, clone SLB887. 531 e-155 2
dna update 2009. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 166 2e-40
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 166 2e-40
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 166 2e-40
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 166 2e-40
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 165 5e-40
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 164 9e-40
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 164 9e-40
K02960_1(K02960|pid:none) Dictyostelium discoideum actin 8 gene,... 164 1e-39
(Q554S6) RecName: Full=Actin-17; AltName: Full=Actin-2-sub 2; &... 162 4e-39
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 161 6e-39
protein update 2009. 6. 1
PSORT

psg: 0.91 gvh: 0.49 alm: 0.46 top: 0.47 tms: 0.00 mit: 0.21 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
12.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SLC461 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC461Z
3' end seq.
>SLC461Z.Seq
----------CGGTAATGTCGTCTTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTG
ATCGTATGAACAAAGAATTAACTGCTTTAGCACCATCAACCATGAAAATTAAAATCATTG
CTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATTTTAGCTTCACTCTCAA
CTTTCCAACAAATGTGGATCTCAAAAGAAGAATATGATGAATCTGGTCCATCAATTGTCC
ACAGAAAATGTTTCTAAATCATGATGAAAGTGCTTCACATAAAAATAATAATAATAATAT
AACAATAATAATATTTAAATGTATAATAAAATTTAATTACTTTTTTTTTAATGGTTGTTG
ATCTTTATCCGACCTTAAAAAAAAAAAAATAAAACC
Length of 3' end seq. 386
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -