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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC460
Library SL
(Link to library)
Clone ID SLC460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLC460Z
(Link to Original site)
Representative DNA sequence 
>SLC460 (SLC460Q) /CSM/SL/SLC4-C/SLC460Q.Seq.d/
XXXXXXXXXXAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCAT
TACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAAC
TGTTGATAATGTTTATGTCACTNCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAA
TGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAATAA
AAAAATAAAAAAATAAATAAAAATATATATAAAAATATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAAAATATTATTAAAAATAAAAAAA
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---YYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTXFTSSDAGGYYFNG
CSFGIIPKK*nnkki*inkkikk*ikiyiki*ink*ink*ink*ikillkikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---iiiv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlvviilm
vvhlvlfqknkiikkyk*ikk*knk*kyi*kyk*ink*ink*ink*kyy*k*k


Frame B:
---lllcnsccilpswffhynekc*snsskyk**cflinc**clchxfyff*cwwllf*w
lfiwyyskkik**knink*knkkinkniyknink*ink*ink*inkniiknkk


Frame C:
---YYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTXFTSSDAGGYYFNG
CSFGIIPKK*nnkki*inkkikk*ikiyiki*ink*ink*ink*ikillkikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        379   e-104
SSK275 (SSK275Q) /CSM/SS/SSK2-D/SSK275Q.Seq.d/                        379   e-104
SSJ519 (SSJ519Q) /CSM/SS/SSJ5-A/SSJ519Q.Seq.d/                        379   e-104
SSI677 (SSI677Q) /CSM/SS/SSI6-D/SSI677Q.Seq.d/                        379   e-104
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/                        379   e-104
SSF888 (SSF888Q) /CSM/SS/SSF8-D/SSF888Q.Seq.d/                        379   e-104
SSF246 (SSF246Q) /CSM/SS/SSF2-B/SSF246Q.Seq.d/                        379   e-104
SSF149 (SSF149Q) /CSM/SS/SSF1-C/SSF149Q.Seq.d/                        379   e-104
SSE643 (SSE643Q) /CSM/SS/SSE6-B/SSE643Q.Seq.d/                        379   e-104
SSE121 (SSE121Q) /CSM/SS/SSE1-A/SSE121Q.Seq.d/                        379   e-104
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU071762) Dictyostelium discoideum slug cDNA, clone SSC474.      379   e-101  1
(AU060185) Dictyostelium discoideum slug cDNA, clone SLA535.      379   e-101  1
(AU052349) Dictyostelium discoideum slug cDNA, clone SLD177.      379   e-101  1
(AU051910) Dictyostelium discoideum slug cDNA, clone SSC376.      379   e-101  1
(AU039482) Dictyostelium discoideum slug cDNA, clone SLH868.      379   e-101  1
(AU037641) Dictyostelium discoideum slug cDNA, clone SSE121.      379   e-101  1
(AU037448) Dictyostelium discoideum slug cDNA, clone SSD651.      379   e-101  1
(AU034741) Dictyostelium discoideum slug cDNA, clone SLE262.      379   e-101  1
(AU034552) Dictyostelium discoideum slug cDNA, clone SLC460.      379   e-101  1
(AU034350) Dictyostelium discoideum slug cDNA, clone SLC730.      379   e-101  1
dna update 2009. 3. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 249,743,405
protein update 2009. 6. 1
PSORT 

 psg: 0.95  gvh: 0.50  alm: 0.40  top: 0.43  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLC460 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC460Z
3' end seq. 
>SLC460Z.Seq
----------AATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCAT
TACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAAC
TGTTGATAATGTTTATGTCACTNCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAA
TGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAATAA
AAAAATAAAAAAATAAATAAAAATATATATAAAAATATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAAAATATTATTAAAAATAAAAAAA
Length of 3' end seq. 333
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -