SLC458
Library SL
(Link to library)
Clone ID SLC458
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID SLC458Z
(Link to Original site)
Representative DNA sequence
>SLC458 (SLC458Q) /CSM/SL/SLC4-C/SLC458Q.Seq.d/
XXXXXXXXXXTATCAATGCCAATATCACTGAACTTCGTAATAGAGGTCCATACAGTAAAT
CTGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAATGGT
TAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACCCGACTCTGATGGTTACAAAGCACTTG
GTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTCTTC
CTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTACTGGTTTTGGTAAAG
AAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATTTTAAAAATGCTATTA
AAATTTTATCTCGTACAATTGATTTATTAGAAAAAAATTAAATTAAAATCCAATAAAACT
CTTTTTTTATAAATTAATTAATTTTATTATTTCAATTTTTAATAAAATATAAAAATAATT
AAAAATAATAATAAAATTATTAAATTTTTTGAAATTAC
sequence update 1998. 5. 7
Translated Amino Acid sequence
---INANITELRNRGPYSKSDVPASEGVEPVKGSVSIEWLGEASAGVACKPDSDGYKALG
KATSEILGSLTPVATCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIK
ILSRTIDLLEKN*ikiq*nsffin*lillfqflikyknn*k***ny*if*ny


Translated Amino Acid sequence (All Frames)
Frame A:
---INANITELRNRGPYSKSDVPASEGVEPVKGSVSIEWLGEASAGVACKPDSDGYKALG
KATSEILGSLTPVATCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIK
ILSRTIDLLEKN*ikiq*nsffin*lillfqflikyknn*k***ny*if*ny


Frame B:
---smpislnfvievhtvnlmyqplkvlnqskvqsllng*vkhqlvslvnptlmvtkhlv
klllkf*vh*lqlqlvvlflwfviskivvsifkllvlvkkklimlimnmlyylilkmllk
fylvqliy*kkiklksnktlfl*in*fyyfnf**nikiiknnnkiikffei


Frame C:
---qcqyh*ts**rsiq*i*ctsl*rc*tsqrfsly*mvr*siswcrl*trl*wlqstw*
syf*nfrfinsscnlwyssfgs*spr*wfrysnywfw*rrnlsc***icfii*f*kcy*n
fisyn*firkkln*npiklffyklinfiisifnki*k*lkiiikllnflkl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC458 (SLC458Q) /CSM/SL/SLC4-C/SLC458Q.Seq.d/ 743 0.0
VFH310 (VFH310Q) /CSM/VF/VFH3-A/VFH310Q.Seq.d/ 735 0.0
VFN568 (VFN568Q) /CSM/VF/VFN5-C/VFN568Q.Seq.d/ 728 0.0
VFN531 (VFN531Q) /CSM/VF/VFN5-B/VFN531Q.Seq.d/ 728 0.0
VFM839 (VFM839Q) /CSM/VF/VFM8-B/VFM839Q.Seq.d/ 728 0.0
VFL827 (VFL827Q) /CSM/VF/VFL8-B/VFL827Q.Seq.d/ 728 0.0
VFL765 (VFL765Q) /CSM/VF/VFL7-C/VFL765Q.Seq.d/ 728 0.0
VFL680 (VFL680Q) /CSM/VF/VFL6-D/VFL680Q.Seq.d/ 728 0.0
VFL627 (VFL627Q) /CSM/VF/VFL6-B/VFL627Q.Seq.d/ 728 0.0
VFL595 (VFL595Q) /CSM/VF/VFL5-D/VFL595Q.Seq.d/ 728 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034551) Dictyostelium discoideum slug cDNA, clone SLC458. 735 0.0 1
(BJ431664) Dictyostelium discoideum cDNA clone:ddv15d03, 3' ... 728 0.0 1
(AU284590) Dictyostelium discoideum gamete cDNA clone:FC-BE0... 720 0.0 1
(AU284501) Dictyostelium discoideum gamete cDNA clone:FC-BA0... 720 0.0 1
(AU051824) Dictyostelium discoideum slug cDNA, clone SSA878. 720 0.0 1
(AU040026) Dictyostelium discoideum slug cDNA, clone SLH474. 720 0.0 1
(AU033606) Dictyostelium discoideum slug cDNA, clone SLB223. 720 0.0 1
(C94423) Dictyostelium discoideum slug cDNA, clone SSK781. 720 0.0 1
(C92765) Dictyostelium discoideum slug cDNA, clone SSF242. 720 0.0 1
(BJ435831) Dictyostelium discoideum cDNA clone:ddv28g17, 3' ... 720 0.0 1
dna update 2009. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase; EC=... 252 3e-66
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co... 249 2e-65
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ... 117 1e-25
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac... 114 1e-24
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom... 114 1e-24
CP000582_97(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 107 2e-22
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly... 106 3e-22
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c... 103 2e-21
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 103 2e-21
CP000113_250(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 88 1e-16
protein update 2009. 6. 1
PSORT

psg: 0.61 gvh: 0.50 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLC458 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC458Z
3' end seq.
>SLC458Z.Seq
----------TATCAATGCCAATATCACTGAACTTCGTAATAGAGGTCCATACAGTAAAT
CTGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAATGGT
TAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACCCGACTCTGATGGTTACAAAGCACTTG
GTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTCTTC
CTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTACTGGTTTTGGTAAAG
AAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATTTTAAAAATGCTATTA
AAATTTTATCTCGTACAATTGATTTATTAGAAAAAAATTAAATTAAAATCCAATAAAACT
CTTTTTTTATAAATTAATTAATTTTATTATTTCAATTTTTAATAAAATATAAAAATAATT
AAAAATAATAATAAAATTATTAAATTTTTTGAAATTAC
Length of 3' end seq. 508
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -