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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC456
Library SL
(Link to library)
Clone ID SLC456
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLC456Z
(Link to Original site)
Representative DNA sequence 
>SLC456 (SLC456Q) /CSM/SL/SLC4-C/SLC456Q.Seq.d/
XXXXXXXXXXAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGT
CCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAG
AATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGA
TTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACA
TGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAG
AAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCAT
CGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATA
TTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAG
AGTTATCAAACAT
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---VACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDL
TEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFID
TSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikh
Translated Amino Acid sequence (All Frames) 
Frame A:
---rlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqpvrlnsi
*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrkslsnss
ippaslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsn


Frame B:
---gclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr*d*irf
n*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenhsqihr
ylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt


Frame C:
---VACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDL
TEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFID
TSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        957   0.0
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/                        957   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                        957   0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                        957   0.0
VFD735 (VFD735Q) /CSM/VF/VFD7-B/VFD735Q.Seq.d/                        957   0.0
VFC683 (VFC683Q) /CSM/VF/VFC6-D/VFC683Q.Seq.d/                        957   0.0
SLK605 (SLK605Q) /CSM/SL/SLK6-A/SLK605Q.Seq.d/                        957   0.0
SLK562 (SLK562Q) /CSM/SL/SLK5-C/SLK562Q.Seq.d/                        957   0.0
SLI874 (SLI874Q) /CSM/SL/SLI8-D/SLI874Q.Seq.d/                        957   0.0
SLI739 (SLI739Q) /CSM/SL/SLI7-B/SLI739Q.Seq.d/                        957   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284555) Dictyostelium discoideum gamete cDNA clone:FC-BC2...   957   0.0    1
(AU284459) Dictyostelium discoideum gamete cDNA clone:FC-AX0...   957   0.0    1
(AU284431) Dictyostelium discoideum gamete cDNA clone:FC-AU2...   957   0.0    1
(AU284329) Dictyostelium discoideum gamete cDNA clone:FC-AM0...   957   0.0    1
(AU268249) Dictyostelium discoideum vegetative cDNA clone:VS...   957   0.0    1
(AU054079) Dictyostelium discoideum slug cDNA, clone SLK562.      957   0.0    1
(AU053542) Dictyostelium discoideum slug cDNA, clone SLI874.      957   0.0    1
(AU053482) Dictyostelium discoideum slug cDNA, clone SLI739.      957   0.0    1
(AU053342) Dictyostelium discoideum slug cDNA, clone SLI430.      957   0.0    1
(AU053292) Dictyostelium discoideum slug cDNA, clone SLI327.      957   0.0    1
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   303   1e-81
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   194   9e-49
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   192   3e-48
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   192   5e-48
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   191   6e-48
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   191   6e-48
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   191   1e-47
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   190   2e-47
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   189   2e-47
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM...   189   2e-47
protein update 2009. 6. 1
PSORT 

 psg: 0.73  gvh: 0.43  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.07
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLC456 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC456Z
3' end seq. 
>SLC456Z.Seq
----------AAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGT
CCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAG
AATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGA
TTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACA
TGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAG
AAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCAT
CGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATA
TTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAG
AGTTATCAAACAT
Length of 3' end seq. 483
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -