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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC455
Library SL
(Link to library)
Clone ID SLC455
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16584-1
Original site URL
Representative seq. ID SLC455Z
(Link to Original site)
Representative DNA sequence 
>SLC455 (SLC455Q) /CSM/SL/SLC4-C/SLC455Q.Seq.d/
XXXXXXXXXXATATCGTGCTAAATTAGATAACAATGATAAATTATTAAAATTCTGTCATG
CTCTTGAAGCTTCCTGTATCGATGCTGTTGAATCTGGTTTCATGACTAAAGATTTAGCAA
TTTGTGTTAAAGGTTCAGTTGAAAATGTAAAACGTACAGACTACTTAAATACTGAAGAAT
ATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATTAACTGCATTGTAAGAAATTTTAT
AAATCTTACTCACTACTACTACCACTACTACTCTACTTCATTATTTCGTGTTGCGGTCTA
TCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTTTTTTATGTTCAAAATTAGTAGTA
ATAAAATAAAATTGTTATAATTATCCCTT
sequence update 1998. 5. 7
Translated Amino Acid sequence 
---YRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEY
INKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshffffmfkissn
kikll*lsl
Translated Amino Acid sequence (All Frames) 
Frame A:
---YRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEY
INKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshffffmfkissn
kikll*lsl


Frame B:
---ivln*itminy*nsvmllklpvsmllnlvs*lki*qfvlkvqlkm*nvqtt*ilkni
lirlpnyllan*lhckkfyksyslllplllyfiisccglsfiflhknlisfflcsklvvi
k*ncynyp


Frame C:
---sc*ir*q**iikilscs*sflyrcc*iwfhd*rfsnlc*rfs*kcktyrllky*riy
**gcritc*qincivrnfinlthyyyhyystslfrvavyhsffsikisflffyvqn****
nkiviiip
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ261 (VSJ261Q) /CSM/VS/VSJ2-C/VSJ261Q.Seq.d/                        468   e-131
VFO677 (VFO677Q) /CSM/VF/VFO6-D/VFO677Q.Seq.d/                        468   e-131
VFM756 (VFM756Q) /CSM/VF/VFM7-C/VFM756Q.Seq.d/                        468   e-131
VFM392 (VFM392Q) /CSM/VF/VFM3-D/VFM392Q.Seq.d/                        468   e-131
VFL572 (VFL572Q) /CSM/VF/VFL5-C/VFL572Q.Seq.d/                        468   e-131
VFL349 (VFL349Q) /CSM/VF/VFL3-C/VFL349Q.Seq.d/                        468   e-131
VFL180 (VFL180Q) /CSM/VF/VFL1-D/VFL180Q.Seq.d/                        468   e-131
VFK756 (VFK756Q) /CSM/VF/VFK7-C/VFK756Q.Seq.d/                        468   e-131
VFJ466 (VFJ466Q) /CSM/VF/VFJ4-C/VFJ466Q.Seq.d/                        468   e-131
VFI567 (VFI567Q) /CSM/VF/VFI5-C/VFI567Q.Seq.d/                        468   e-131
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039264) Dictyostelium discoideum slug cDNA, clone SLH307.      468   e-177  3
(AU034557) Dictyostelium discoideum slug cDNA, clone SLC469.      468   e-177  3
(AU034549) Dictyostelium discoideum slug cDNA, clone SLC455.      468   e-177  3
(BJ433964) Dictyostelium discoideum cDNA clone:ddv23b13, 3' ...   468   e-172  3
(BJ433709) Dictyostelium discoideum cDNA clone:ddv22p13, 3' ...   468   e-171  3
(BJ432389) Dictyostelium discoideum cDNA clone:ddv18e17, 3' ...   468   e-170  3
(BJ428432) Dictyostelium discoideum cDNA clone:ddv11m19, 3' ...   468   e-170  3
(BJ400795) Dictyostelium discoideum cDNA clone:dds14i20, 3' ...   468   e-168  3
(BJ430919) Dictyostelium discoideum cDNA clone:ddv9c12, 3' e...   468   e-167  3
(BJ399859) Dictyostelium discoideum cDNA clone:dds7d23, 3' e...   468   e-167  3
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JR3) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm...   138   5e-32
BT077406_1(BT077406|pid:none) Lepeophtheirus salmonis clone lsal...    91   9e-18
BT080533_1(BT080533|pid:none) Caligus clemensi clone ccle-evs-50...    89   4e-17
(Q75JR2) RecName: Full=Isocitrate dehydrogenase [NADP], mitochon...    88   8e-17
DQ886272_1(DQ886272|pid:none) Gryllus firmus isocitrate dehydrog...    82   4e-15
EF085570_1(EF085570|pid:none) Picea sitchensis clone WS02811_B16...    81   1e-14
(P41562) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm...    80   2e-14
DQ311191_1(DQ311191|pid:none) Bombyx mori isocitrate dehydrogena...    80   2e-14
(O88844) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm...    79   4e-14
BC088986_1(BC088986|pid:none) Mus musculus isocitrate dehydrogen...    79   4e-14
protein update 2009. 6. 1
PSORT 

 psg: 0.79  gvh: 0.48  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLC455 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC455Z
3' end seq. 
>SLC455Z.Seq
----------ATATCGTGCTAAATTAGATAACAATGATAAATTATTAAAATTCTGTCATG
CTCTTGAAGCTTCCTGTATCGATGCTGTTGAATCTGGTTTCATGACTAAAGATTTAGCAA
TTTGTGTTAAAGGTTCAGTTGAAAATGTAAAACGTACAGACTACTTAAATACTGAAGAAT
ATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATTAACTGCATTGTAAGAAATTTTAT
AAATCTTACTCACTACTACTACCACTACTACTCTACTTCATTATTTCGTGTTGCGGTCTA
TCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTTTTTTATGTTCAAAATTAGTAGTA
ATAAAATAAAATTGTTATAATTATCCCTT
Length of 3' end seq. 379
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -