NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC452
Library SL
(Link to library)
Clone ID SLC452
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08358-1
Original site URL
Representative seq. ID SLC452E
(Link to Original site)
Representative DNA sequence 
>SLC452 (SLC452Q) /CSM/SL/SLC4-C/SLC452Q.Seq.d/
AAAACATGAAAAATATAGTAAAAATAGAACAATTAGAATTAGCATCAGCAGTAGTAGAAT
TAGGAAAAAAAGTAGGAGCAGGATTAGCAGCAATTGGATTAACAGGAGCAGGAGCAGGAG
TAGGAATAGTATTTGCAGCATTTATATTAGCTGTAGGAATGAATCCAAATTTAAGAGGAG
AATTATTTAAATTAGCAATGTTAGGATTTGCATTATCAGAAGCTGTAGGATTATTAGCTT
TAATGATGTCATTCTTAATCTTATACTCATAAGATTAAAAAACTAGTAATAGTAACTAAA
ACTGTTGGTTCCAATGCCCTAAGCGGCATTTATTAGATTCGAAAATTTATAGAGTAATTC
TGTAAGTCAGAAAACTAAACTCCTGTAGTTTAATAGGTTAGAACACCACACTCATAATGT
GGCAAATATCGGTTCGAGTCCGATCGGGAGCACGTAAAAAATAAAAAGAAGAAATGTTCA
ATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA
sequence update 1999. 6.18
Translated Amino Acid sequence 
NMKNIVKIEQLELASAVVELGKKVGAGLAAIGLTGAGAGVGIVFAAFILAVGMNPNLRGE
LFKLAMLGFALSEAVGLLALMMSFLILYS*d*ktsnsn*ncwfqcpkrhlldskiyrvil
*vrklnscslig*nttlimwqisvrvrsgarkk*keemfnhinvslvtpplffq*skk
Translated Amino Acid sequence (All Frames) 
Frame A:
kt*ki**k*nn*n*hqq**n*ekk*eqd*qqld*qeqeqe*e*ylqhly*l*e*iqi*ee
nyln*qc*dlhyqkl*dy*l**chs*sythkikklvivtktvgsnalsgiy*irkfie*f
cksen*tpvv**vrtphs*cgkyrfesdrehvknkkkkcsii*myrwlllpfffnnqkk


Frame B:
khekysknrtirisisssrirkksrsrissnwinrsrsrsrnsicsiyiscrneskfkrr
ii*isnvriciirscriisfndvilnlilirlkn****lkllvpmp*aafirfenl*sns
vsqktkll*fnrlehhthnvanigsspigst*kikrrnvqsykcivgysspffsiikk


Frame C:
NMKNIVKIEQLELASAVVELGKKVGAGLAAIGLTGAGAGVGIVFAAFILAVGMNPNLRGE
LFKLAMLGFALSEAVGLLALMMSFLILYS*d*ktsnsn*ncwfqcpkrhlldskiyrvil
*vrklnscslig*nttlimwqisvrvrsgarkk*keemfnhinvslvtpplffq*skk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC452 (SLC452Q) /CSM/SL/SLC4-C/SLC452Q.Seq.d/                        904   0.0
VSJ746 (VSJ746Q) /CSM/VS/VSJ7-B/VSJ746Q.Seq.d/                        860   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               860   0.0
SLB620 (SLB620Q) /CSM/SL/SLB6-A/SLB620Q.Seq.d/                        704   0.0
VSF554 (VSF554Q) /CSM/VS/VSF5-C/VSF554Q.Seq.d/                        127   2e-28
VSH257 (VSH257Q) /CSM/VS/VSH2-C/VSH257Q.Seq.d/                        117   2e-25
VSH541 (VSH541Q) /CSM/VS/VSH5-B/VSH541Q.Seq.d/                         92   1e-17
VHG241 (VHG241Q) /CSM/VH/VHG2-B/VHG241Q.Seq.d/                         92   1e-17
SSM886 (SSM886Q) /CSM/SS/SSM8-D/SSM886Q.Seq.d/                         92   1e-17
SSM603 (SSM603Q) /CSM/SS/SSM6-A/SSM603Q.Seq.d/                         92   1e-17
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060975) Dictyostelium discoideum slug cDNA, clone SLC452.      761   0.0    3
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   761   0.0    2
(D16466) Dictyostelium discoideum mitochondrial genes for la...   761   0.0    2
(AU270408) Dictyostelium discoideum vegetative cDNA clone:VS...   761   0.0    2
(AU033924) Dictyostelium discoideum slug cDNA, clone SLB620.      660   0.0    2
(AU034548) Dictyostelium discoideum slug cDNA, clone SLC452.      525   e-166  2
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...   383   e-155  3
(AU270407) Dictyostelium discoideum vegetative cDNA clone:VS...   313   e-113  2
(EU339291) Dictyostelium purpureum strain WS321 tRNA-Pro gen...   307   e-104  2
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri...   131   7e-52  3
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q2LCR3) RecName: Full=ATP synthase subunit 9, mitochondrial; Al...   109   5e-23
EU339291_1(EU339291|pid:none) Dictyostelium purpureum strain WS3...   103   4e-21
EU275726_14(EU275726|pid:none) Polysphondylium pallidum strain P...    89   7e-17
AY700145_41(AY700145|pid:none) Polysphondylium pallidum mitochon...    89   7e-17
EU275727_16(EU275727|pid:none) Dictyostelium fasciculatum strain...    88   2e-16
DQ351941_10(DQ351941|pid:none) Verticillium dahliae mitochondrio...    57   2e-07
DQ178134_1(DQ178134|pid:none) Aspergillus niger strain N909 ATP ...    56   5e-07
(Q37377) RecName: Full=ATP synthase subunit 9, mitochondrial; Al...    56   7e-07
DQ993184_8(DQ993184|pid:none) Tilletia indica strain F11 mitocho...    55   9e-07
EF536375_8(EF536375|pid:none) Tilletia walkeri strain TJ23 mitoc...    55   9e-07
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.61  alm: 0.25  top: 0.67  tms: 0.13  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SLC452 is end
5' end seq. ID SLC452F
5' end seq. 
>SLC452F.Seq
AAAACATGAAAAATATAGTAAAAATAGAACAATTAGAATTAGCATCAGCAGTAGTAGAAT
TAGGAAAAAAAGTAGGAGCAGGATTAGCAGCAATTGGATTAACAGGAGCAGGAGCAGGAG
TAGGAATAGTATTTGCAGCATTTATATTAGCTGTAGGAATGAATCCAAATTTAAGAGGAG
AATTATTTAAATTAGCAATGTTAGGATTTGCATTATCAGAAGCTGTAGGATTATTAGCTT
TAATGATGTCATTCTTAATCTTATACTCATAAGATTAAAAAACTAGTAATAGTAACTAAA
ACTGTTGGTTCCAATGCCCTAAGCGGCATTTATTAGATTCGAAAATTTATAGAGTAATTC
TGTAAGTCAGAAAACTAAACTCCTGTAGTTTAATAGGTTAGAACACCACACTCATAATGT
GGCAAATATCGGTTCGAGTCCGATCGGGAGCACGTAAAAAATAAAAAGAAGAAATGTTCA
ATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA
Length of 5' end seq. 537
3' end seq. ID SLC452Z
3' end seq. 
>SLC452Z.Seq
----------ATTAGCAATGTTAGGATTTGCATTATCAGAAGCTGTAGGATTATTAGCTT
TAATGATGTCATTCTTAATCTTATACTCATAAGATTAAAAAACTAGTAATAGTAACTAAA
ACTGTTGGTTCCAATGCCCTAAGCGGCATTTATTAGATTCGAAAATTTATAGAGTAATTC
TGTAAGTCAGAAAACTAAACTCCTGTAGTTTAATAGGTTAGAACACCACACTCATAATGT
GGCAAATATCGGTTCGAGTCCGATCGGGAGCACGTAAAAAATAAAAAGAAGAAATGTTCA
ATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA
Length of 3' end seq. 347
Connected seq. ID SLC452P
Connected seq. 
>SLC452P.Seq
AAAACATGAAAAATATAGTAAAAATAGAACAATTAGAATTAGCATCAGCAGTAGTAGAAT
TAGGAAAAAAAGTAGGAGCAGGATTAGCAGCAATTGGATTAACAGGAGCAGGAGCAGGAG
TAGGAATAGTATTTGCAGCATTTATATTAGCTGTAGGAATGAATCCAAATTTAAGAGGAG
AATTATTTAAATTAGCAATGTTAGGATTTGCATTATCAGAAGCTGTAGGATTATTAGCTT
TAATGATGTCATTCTTAATCTTATACTCATAAGATTAAAAAACTAGTAATAGTAACTAAA
ACTGTTGGTTCCAATGCCCTAAGCGGCATTTATTAGATTCGAAAATTTATAGAGTAATTC
TGTAAGTCAGAAAACTAAACTCCTGTAGTTTAATAGGTTAGAACACCACACTCATAATGT
GGCAAATATCGGTTCGAGTCCGATCGGGAGCACGTAAAAAATAAAAAGAAGAAATGTTCA
ATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA---
-------ATTAGCAATGTTAGGATTTGCATTATCAGAAGCTGTAGGATTATTAGCTTTAA
TGATGTCATTCTTAATCTTATACTCATAAGATTAAAAAACTAGTAATAGTAACTAAAACT
GTTGGTTCCAATGCCCTAAGCGGCATTTATTAGATTCGAAAATTTATAGAGTAATTCTGT
AAGTCAGAAAACTAAACTCCTGTAGTTTAATAGGTTAGAACACCACACTCATAATGTGGC
AAATATCGGTTCGAGTCCGATCGGGAGCACGTAAAAAATAAAAAGAAGAAATGTTCAATC
ATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA
Length of connected seq. 884
Full length Seq ID SLC452E
Full length Seq. 
>SLC452E.Seq
AAAACATGAAAAATATAGTAAAAATAGAACAATTAGAATTAGCATCAGCAGTAGTAGAAT
TAGGAAAAAAAGTAGGAGCAGGATTAGCAGCAATTGGATTAACAGGAGCAGGAGCAGGAG
TAGGAATAGTATTTGCAGCATTTATATTAGCTGTAGGAATGAATCCAAATTTAAGAGGAG
AATTATTTAAATTAGCAATGTTAGGATTTGCATTATCAGAAGCTGTAGGATTATTAGCTT
TAATGATGTCATTCTTAATCTTATACTCATAAGATTAAAAAACTAGTAATAGTAACTAAA
ACTGTTGGTTCCAATGCCCTAAGCGGCATTTATTAGATTCGAAAATTTATAGAGTAATTC
TGTAAGTCAGAAAACTAAACTCCTGTAGTTTAATAGGTTAGAACACCACACTCATAATGT
GGCAAATATCGGTTCGAGTCCGATCGGGAGCACGTAAAAAATAAAAAGAAGAAATGTTCA
ATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTTCAATAATCAAAAAAAA
Length of full length seq. 537