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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC444
Library SL
(Link to library)
Clone ID SLC444
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLC444Z
(Link to Original site)
Representative DNA sequence 
>SLC444 (SLC444Q) /CSM/SL/SLC4-B/SLC444Q.Seq.d/
XXXXXXXXXXGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCA
TGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCA
ACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGT
GGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGC
GCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCA
AGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCC
TCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCA
GAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATCAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---MICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGG
TTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSAS
SSAPSSSASSSAASSAASSESSESSSATS*ikl*sk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ndlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnww
nynwwfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilcl
k*csiiisfkfsciiscklrklrklishfinktlik


Frame B:
---MICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGG
TTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSAS
SSAPSSSASSSAASSAASSESSESSSATS*ikl*sk


Frame C:
---*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlve
lqlvvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpq
vvlhhhqlqvqlhhqlqaqkaqkahqplhk*nfdqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/                        916   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                        916   0.0
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/                        916   0.0
SLI237 (SLI237Q) /CSM/SL/SLI2-B/SLI237Q.Seq.d/                        916   0.0
SLG857 (SLG857Q) /CSM/SL/SLG8-C/SLG857Q.Seq.d/                        916   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                        916   0.0
SLG642 (SLG642Q) /CSM/SL/SLG6-B/SLG642Q.Seq.d/                        916   0.0
SLG257 (SLG257Q) /CSM/SL/SLG2-C/SLG257Q.Seq.d/                        916   0.0
SLF168 (SLF168Q) /CSM/SL/SLF1-C/SLF168Q.Seq.d/                        916   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                        916   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com...   914   0.0    1
(AU053254) Dictyostelium discoideum slug cDNA, clone SLI237.      914   0.0    1
(AU052823) Dictyostelium discoideum slug cDNA, clone SLF168.      914   0.0    1
(AU052233) Dictyostelium discoideum slug cDNA, clone SLA287.      914   0.0    1
(AU039966) Dictyostelium discoideum slug cDNA, clone SLG857.      914   0.0    1
(AU039917) Dictyostelium discoideum slug cDNA, clone SLG750.      914   0.0    1
(AU039879) Dictyostelium discoideum slug cDNA, clone SLG642.      914   0.0    1
(AU039720) Dictyostelium discoideum slug cDNA, clone SLG257.      914   0.0    1
(AU038958) Dictyostelium discoideum slug cDNA, clone SSM203.      914   0.0    1
(AU034790) Dictyostelium discoideum slug cDNA, clone SLE334.      914   0.0    1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        37   0.21
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    37   0.21
EU247178_1(EU247178|pid:none) Lycosa singoriensis clone LSsin992...    33   3.1
protein update 2009. 1.21
PSORT 

 psg: 0.86  gvh: 0.50  alm: 0.48  top: 0.60  tms: 0.00  mit: 0.54  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for SLC444 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC444Z
3' end seq. 
>SLC444Z.Seq
----------GAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCA
TGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCA
ACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGT
GGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGC
GCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCA
AGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCC
TCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCA
GAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATCAAAAA
Length of 3' end seq. 462
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -