NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC443
Library SL
(Link to library)
Clone ID SLC443
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16518-1
Original site URL
Representative seq. ID SLC443P
(Link to Original site)
Representative DNA sequence 
>SLC443 (SLC443Q) /CSM/SL/SLC4-B/SLC443Q.Seq.d/
ACAAAATGAGTCTAAATTGGGCAGATGAAACTGAAAATGAAGAGAGAGAGAATGAGATGA
AAGCAATTGTTGAACCAGTTCAACCACAACAACCAACTCAATCTTCTTTACCTCAAGCAT
CAATTCAACCAGAACCAGTAGTTGAACAACAACAACAACAACCACCACAACAACAACAAC
CACCACAAACTCAAGATGATGAACGTGATAACTACAACAACAATAACAACAGATCATCAG
GTGGTAGAGGAGATTATAGCGGTAATAGTAATAATAGTAATAATTACTATAACAATAACA
ATAATAATAACCGTCAACAAGGTGGTTATCAAAATAACAACAACAACAGATACAACAATA
ACAATAACCAACAAGGCGGATACCAAAACAATAACAACAACAGATATAACAATAACAACC
AACAAGGTGGTTACCAAAATAGATACAACAACAATAACAATAACCAXXXXXXXXXXCCAC
AACAACAAAATGATAATAAATACAGACCAAACTCAATGAGAACTAATAGTGGATTCAAAC
AAAATGACAATAAATTTGATAACAACAACAAATTTGATAACAAGAAACCATTTGGACAAA
ATAAATACAACAACAAGAGAGAAGAAGATGGTTGGAAATCAACTGGTCCAGCAAGACATC
CAAAAGATCAACCATCAAAAGAAGTATCACAACCAACTGTTGCCAAGACTTCTGGAAATA
TTTTCGAATGTTTAGAACAAGACGATTAAACAAATCATATTAATAAAAAACAACTAAAAC
sequence update 1999. 2.19
Translated Amino Acid sequence 
KMSLNWADETENEERENEMKAIVEPVQPQQPTQSSLPQASIQPEPVVEQQQQQPPQQQQP
PQTQDDERDNYNNNNNRSSGGRGDYSGNSNNSNNYYNNNNNNNRQQGGYQNNNNNRYNNN
NNQQGGYQNNNNNRYNNNNQQGGYQNRYNNNNNN---

---PQQQNDNKYRPNSMRTNSGFKQNDNKFDNNNKFDNKKPFGQNKYNNKREEDGWKSTG
PARHPKDQPSKEVSQPTVAKTSGNIFECLEQDD*tnhinkkqlk
Translated Amino Acid sequence (All Frames) 
Frame A:
tk*v*igqmklkmkrermr*kqllnqfnhnnqlnllylkhqfnqnq*lnnnnnnhhnnnn
hhklkmmnvittttittdhqvveeiiaviviiviitititiiitvnkvvikittttdtti
titnkadtktitttditittnkvvtkidtttitit---

---PQQQNDNKYRPNSMRTNSGFKQNDNKFDNNNKFDNKKPFGQNKYNNKREEDGWKSTG
PARHPKDQPSKEVSQPTVAKTSGNIFECLEQDD*tnhinkkqlk

Frame B:
qnesklgr*n*k*rere*desnc*tssttttnsifftssinstrtss*tttttttttttt
ttnsr**t**lqqq*qqiirw*rrl*r*******ll*q*q***pstrwlsk*qqqqiqq*
q*ptrripkq*qqqi*q*qptrwlpk*iqqq*q*p---

---hnnkmiintdqtq*elivdsnkmtinlitttnlitrnhldkintttrekkmvgnqlv
qqdiqkinhqkkyhnqllprlleifsnv*nktikqiiliknn*n

Frame C:
KMSLNWADETENEERENEMKAIVEPVQPQQPTQSSLPQASIQPEPVVEQQQQQPPQQQQP
PQTQDDERDNYNNNNNRSSGGRGDYSGNSNNSNNYYNNNNNNNRQQGGYQNNNNNRYNNN
NNQQGGYQNNNNNRYNNNNQQGGYQNRYNNNNNN---

---tttk***iqtklnen**wiqtk*q*i**qqqi**qetiwtk*iqqqerrrwleinws
sktskrstikrsittnccqdfwkyfrmfrtrrlnksy**kttk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC443 (SLC443Q) /CSM/SL/SLC4-B/SLC443Q.Seq.d/                        644   0.0
SLH467 (SLH467Q) /CSM/SL/SLH4-C/SLH467Q.Seq.d/                        595   e-169
VFH676 (VFH676Q) /CSM/VF/VFH6-D/VFH676Q.Seq.d/                        577   e-164
VFI629 (VFI629Q) /CSM/VF/VFI6-B/VFI629Q.Seq.d/                        575   e-163
AFE677 (AFE677Q) /CSM/AF/AFE6-D/AFE677Q.Seq.d/                        575   e-163
AFC880 (AFC880Q) /CSM/AF/AFC8-D/AFC880Q.Seq.d/                        553   e-156
AFH480 (AFH480Q) /CSM/AF/AFH4-D/AFH480Q.Seq.d/                        551   e-156
AFK402 (AFK402Q) /CSM/AF/AFK4-A/AFK402Q.Seq.d/                        547   e-155
AFI776 (AFI776Q) /CSM/AF/AFI7-D/AFI776Q.Seq.d/                        539   e-152
VSK435 (VSK435Q) /CSM/VS/VSK4-B/VSK435Q.Seq.d/                        537   e-152
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU040022) Dictyostelium discoideum slug cDNA, clone SLH467.      595   e-169  2
(AU034284) Dictyostelium discoideum slug cDNA, clone SLC443.      603   e-168  1
(BJ434424) Dictyostelium discoideum cDNA clone:ddv16g20, 3' ...   531   e-162  3
(BJ432321) Dictyostelium discoideum cDNA clone:ddv18i08, 3' ...   567   e-162  2
(BJ339896) Dictyostelium discoideum cDNA clone:dda10i20, 3' ...   575   e-161  2
(BJ341507) Dictyostelium discoideum cDNA clone:dda6p20, 3' e...   553   e-158  2
(BJ343038) Dictyostelium discoideum cDNA clone:dda15p20, 3' ...   551   e-155  2
(BJ344231) Dictyostelium discoideum cDNA clone:dda18h19, 3' ...   539   e-151  2
(BJ344932) Dictyostelium discoideum cDNA clone:dda21d02, 3' ...   525   e-151  3
(AU271191) Dictyostelium discoideum vegetative cDNA clone:VS...   466   e-148  3
dna update 2009. 3. 2
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 530,152,490
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC443 is nuc
5' end seq. ID SLC443F
5' end seq. 
>SLC443F.Seq
ACAAAATGAGTCTAAATTGGGCAGATGAAACTGAAAATGAAGAGAGAGAGAATGAGATGA
AAGCAATTGTTGAACCAGTTCAACCACAACAACCAACTCAATCTTCTTTACCTCAAGCAT
CAATTCAACCAGAACCAGTAGTTGAACAACAACAACAACAACCACCACAACAACAACAAC
CACCACAAACTCAAGATGATGAACGTGATAACTACAACAACAATAACAACAGATCATCAG
GTGGTAGAGGAGATTATAGCGGTAATAGTAATAATAGTAATAATTACTATAACAATAACA
ATAATAATAACCGTCAACAAGGTGGTTATCAAAATAACAACAACAACAGATACAACAATA
ACAATAACCAACAAGGCGGATACCAAAACAATAACAACAACAGATATAACAATAACAACC
AACAAGGTGGTTACCAAAATAGATACAACAACAATAACAATAACCA----------
Length of 5' end seq. 466
3' end seq. ID SLC443Z
3' end seq. 
>SLC443Z.Seq
----------CCACAACAACAAAATGATAATAAATACAGACCAAACTCAATGAGAACTAA
TAGTGGATTCAAACAAAATGACAATAAATTTGATAACAACAACAAATTTGATAACAAGAA
ACCATTTGGACAAAATAAATACAACAACAAGAGAGAAGAAGATGGTTGGAAATCAACTGG
TCCAGCAAGACATCCAAAAGATCAACCATCAAAAGAAGTATCACAACCAACTGTTGCCAA
GACTTCTGGAAATATTTTCGAATGTTTAGAACAAGACGATTAAACAAATCATATTAATAA
AAAACAACTAAAAC
Length of 3' end seq. 304
Connected seq. ID SLC443P
Connected seq. 
>SLC443P.Seq
ACAAAATGAGTCTAAATTGGGCAGATGAAACTGAAAATGAAGAGAGAGAGAATGAGATGA
AAGCAATTGTTGAACCAGTTCAACCACAACAACCAACTCAATCTTCTTTACCTCAAGCAT
CAATTCAACCAGAACCAGTAGTTGAACAACAACAACAACAACCACCACAACAACAACAAC
CACCACAAACTCAAGATGATGAACGTGATAACTACAACAACAATAACAACAGATCATCAG
GTGGTAGAGGAGATTATAGCGGTAATAGTAATAATAGTAATAATTACTATAACAATAACA
ATAATAATAACCGTCAACAAGGTGGTTATCAAAATAACAACAACAACAGATACAACAATA
ACAATAACCAACAAGGCGGATACCAAAACAATAACAACAACAGATATAACAATAACAACC
AACAAGGTGGTTACCAAAATAGATACAACAACAATAACAATAACCA----------CCAC
AACAACAAAATGATAATAAATACAGACCAAACTCAATGAGAACTAATAGTGGATTCAAAC
AAAATGACAATAAATTTGATAACAACAACAAATTTGATAACAAGAAACCATTTGGACAAA
ATAAATACAACAACAAGAGAGAAGAAGATGGTTGGAAATCAACTGGTCCAGCAAGACATC
CAAAAGATCAACCATCAAAAGAAGTATCACAACCAACTGTTGCCAAGACTTCTGGAAATA
TTTTCGAATGTTTAGAACAAGACGATTAAACAAATCATATTAATAAAAAACAACTAAAAC
Length of connected seq. 770
Full length Seq ID -
Full length Seq. -
Length of full length seq. -