SLC442
Library SL
(Link to library)
Clone ID SLC442
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID SLC442Z
(Link to Original site)
Representative DNA sequence
>SLC442 (SLC442Q) /CSM/SL/SLC4-B/SLC442Q.Seq.d/
XXXXXXXXXXACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACA
TGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCA
AAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTG
CTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATC
GTATGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCNA
CAAACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAA
TGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTG
TTATATTATTATAATAAAATAAATTTTAAAAAAAATCTTCAAATATAAAAAAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence
---RIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETA
LLTSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEM
EKVD*i*llalllsifwnivill**nkf*kkssnikkk


Translated Amino Acid sequence (All Frames)
Frame A:
---RIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETA
LLTSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEM
EKVD*i*llalllsifwnivill**nkf*kkssnikkk


Frame B:
---vs*klklsvtlqchhtchqrkl*n*iqitqslei*pkkppkkvklsktlftyymkll
s*lqvsh*mnhhhllhvfiv*ln*v*afkmihqqqlknxqtqqpvmifhh*kktmnhlkw
kkstrfny*pfcyqffgillyyynkinfkknlqi*kkk


Frame C:
---yhessssp*lfnviihvikenfriksrspnr*rfsqksrrkk*nfqrlcllii*ncs
lnfrflir*tiiicftyssyd*irfkhsr*fisnn*rixkhnnq**ystirrkr*ti*ng
ksrldlitspfainfleycyiiiik*ilkkifkykkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK288 (VSK288Q) /CSM/VS/VSK2-D/VSK288Q.Seq.d/ 571 e-162
VSA716 (VSA716Q) /CSM/VS/VSA7-A/VSA716Q.Seq.d/ 571 e-162
VHP779 (VHP779Q) /CSM/VH/VHP7-D/VHP779Q.Seq.d/ 571 e-162
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/ 571 e-162
VHO658 (VHO658Q) /CSM/VH/VHO6-C/VHO658Q.Seq.d/ 571 e-162
VHO403 (VHO403Q) /CSM/VH/VHO4-A/VHO403Q.Seq.d/ 571 e-162
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/ 571 e-162
VHI392 (VHI392Q) /CSM/VH/VHI3-D/VHI392Q.Seq.d/ 571 e-162
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/ 571 e-162
VHH720 (VHH720Q) /CSM/VH/VHH7-A/VHH720Q.Seq.d/ 571 e-162

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ354388) Dictyostelium discoideum cDNA clone:dda53o12, 3' ... 561 0.0 2
(BJ378815) Dictyostelium discoideum cDNA clone:ddc32m23, 3' ... 561 0.0 2
(BJ437344) Dictyostelium discoideum cDNA clone:ddv33p20, 3' ... 561 0.0 2
(BJ349806) Dictyostelium discoideum cDNA clone:dda37o18, 3' ... 561 0.0 2
(BJ380721) Dictyostelium discoideum cDNA clone:ddc39h01, 3' ... 561 0.0 2
(BJ445748) Dictyostelium discoideum cDNA clone:ddv60c16, 3' ... 561 0.0 2
(BJ438896) Dictyostelium discoideum cDNA clone:ddv38f21, 3' ... 561 0.0 2
(BJ358247) Dictyostelium discoideum cDNA clone:dda56c22, 3' ... 561 0.0 2
(BJ446503) Dictyostelium discoideum cDNA clone:ddv62n19, 3' ... 561 0.0 2
(BJ436759) Dictyostelium discoideum cDNA clone:ddv32l02, 3' ... 561 0.0 2
dna update 2009. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein; 175 4e-43
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1.... 175 4e-43
AB267894_1(AB267894|pid:none) Prymnesium parvum mRNA for heat sh... 118 7e-26
AY292370_1(AY292370|pid:none) Toxoplasma gondii HSP90 mRNA, comp... 112 3e-24
DQ884433_1(DQ884433|pid:none) Karlodinium micrum clone Kmi-5p-cD... 112 4e-24
AF402101_1(AF402101|pid:none) Achlya ambisexualis isolate JS855 ... 111 9e-24
(O57521) RecName: Full=Heat shock protein HSP 90-beta; &BC06535... 111 9e-24
AF402100_1(AF402100|pid:none) Achlya ambisexualis isolate JS854 ... 111 9e-24
AM426751_2(AM426751|pid:none) Vitis vinifera contig VV78X138759.... 110 1e-23
AM423851_1(AM423851|pid:none) Vitis vinifera contig VV78X192584.... 110 1e-23
protein update 2009. 6. 1
PSORT

psg: 0.85 gvh: 0.49 alm: 0.41 top: 0.47 tms: 0.00 mit: 0.39 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
28.0 %: cytoplasmic
16.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SLC442 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC442Z
3' end seq.
>SLC442Z.Seq
----------ACGTATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACA
TGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCA
AAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTG
CTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATC
GTATGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCNA
CAAACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAA
TGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTTGGAATATTG
TTATATTATTATAATAAAATAAATTTTAAAAAAAATCTTCAAATATAAAAAAAAAAA
Length of 3' end seq. 467
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -