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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC441
Library SL
(Link to library)
Clone ID SLC441
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00414-1
Original site URL
Representative seq. ID SLC441P
(Link to Original site)
Representative DNA sequence 
>SLC441 (SLC441Q) /CSM/SL/SLC4-B/SLC441Q.Seq.d/
AATCCATATAAACACAATAGTATTAAATTTCACTATAATTTTTTTTTTTTTTTTTTAAAC
AAAAATAATAATTTAAAAAAAAAAAAAATAATAATAAATAATAAAAAAAAATAGTAAATA
ATAAATAATAAAAATAAAATAAATAATTTTTTTTTTTTTTCTTTTAATAAAATTAAATAT
ATCTTTTGTTATAAAAAAAAAAATAAAXXXXXXXXXXTTTACAACATCACCATGAAGAAT
CAAAAAATAGTTCCAATCAATATTTCATATCACAACAACCAAATGCAAATTCAAAAATGG
TACAATTGCAATCATCGCCATATGTAGAAAGTCCAATTAAAGGTTTAACCGGTTCTGGTA
GTGAAGTTATTAAAATTTATTTTAGAAATGATTCTTATAAATCTGTTAAAGTAACTGCAT
CAGATAATTGCCAATCCATAATTAGAGTTATGTGCGAAAAATTCAATATGAAATCATTTG
ATAAATGTTTTGACCTTTGTGAAGTCATTAAAGGTCAAGTTAGATTCCTTCCACCAAATG
ACCTTTTATTAGAATCAAAATTAAAAAATTGGCCAATCATTTTAACAAATAACGGTTATG
AAACTAATAATCATTGTCATTTTTCAATTGTAATTAAAAAAACAGCTCCAAAAGAAGCAA
TTAAATTATTTGAATCAATTTTATAAAAAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
npykhnsikfhynffffflnknnnlkkkkiiinnkkk**IINNKNKINNFFFFSFNKIKY
IFCYKKKNK---

---LQHHHEESKNSSNQYFISQQPNANSKMVQLQSSPYVESPIKGLTGSGSEVIKIYFRN
DSYKSVKVTASDNCQSIIRVMCEKFNMKSFDKCFDLCEVIKGQVRFLPPNDLLLESKLKN
WPIILTNNGYETNNHCHFSIVIKKTAPKEAIKLFESIL*k
Translated Amino Acid sequence (All Frames) 
Frame A:
npykhnsikfhynffffflnknnnlkkkkiiinnkkk**IINNKNKINNFFFFSFNKIKY
IFCYKKKNK---

---fttsp*rikk*fqsifhitttkckfkngtiaiiaicrksn*rfnrfw**sy*nlf*k
*fl*ic*sncir*lpihn*syvrkiqyeii**mf*pl*sh*rss*ipstk*pfirikikk
lanhfnk*rl*n**slsffncn*knsskrsn*ii*infik

Frame B:
ihintivlnftiifffff*tkiii*kkkk***iikknsk**iikik*iifffflliklni
sfvikkki---

---LQHHHEESKNSSNQYFISQQPNANSKMVQLQSSPYVESPIKGLTGSGSEVIKIYFRN
DSYKSVKVTASDNCQSIIRVMCEKFNMKSFDKCFDLCEVIKGQVRFLPPNDLLLESKLKN
WPIILTNNGYETNNHCHFSIVIKKTAPKEAIKLFESIL*k

Frame C:
si*tq*y*isl*ffffffkqk**fkkkknnnk**kkivnnk**k*nk*ffffff**n*iy
lll*kkk*---

---ynitmknqkivpinisyhnnqmqiqkwyncnhrhm*kvqlkv*pvlvvkllkfilem
ilinllk*lhqiianp*lelcaknsi*nhlinvltfvkslkvkldsfhqmtfy*nqn*ki
gqsf*qitvmkliiivifql*lkkqlqkkqlnylnqfykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM686 (SSM686Q) /CSM/SS/SSM6-D/SSM686Q.Seq.d/                        896   0.0
SSF193 (SSF193Q) /CSM/SS/SSF1-D/SSF193Q.Seq.d/                        896   0.0
SLI162 (SLI162Q) /CSM/SL/SLI1-C/SLI162Q.Seq.d/                        896   0.0
SLC441 (SLC441Q) /CSM/SL/SLC4-B/SLC441Q.Seq.d/                        896   0.0
AFK293 (AFK293Q) /CSM/AF/AFK2-D/AFK293Q.Seq.d/                        682   0.0
AFI347 (AFI347Q) /CSM/AF/AFI3-B/AFI347Q.Seq.d/                        509   e-143
VFK646 (VFK646Q) /CSM/VF/VFK6-B/VFK646Q.Seq.d/                         44   0.003
VFC605 (VFC605Q) /CSM/VF/VFC6-A/VFC605Q.Seq.d/                         44   0.003
SSH874 (SSH874Q) /CSM/SS/SSH8-D/SSH874Q.Seq.d/                         44   0.003
SSA107 (SSA107Q) /CSM/SS/SSA1-A/SSA107Q.Seq.d/                         38   0.17
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92751) Dictyostelium discoideum slug cDNA, clone SSF193.        829   0.0    2
(C93152) Dictyostelium discoideum slug cDNA, clone SSM686.        829   0.0    2
(AU053218) Dictyostelium discoideum slug cDNA, clone SLI162.      829   0.0    2
(AU034282) Dictyostelium discoideum slug cDNA, clone SLC441.      829   0.0    2
(BJ345176) Dictyostelium discoideum cDNA clone:dda21i24, 3' ...   646   0.0    2
(BJ343862) Dictyostelium discoideum cDNA clone:dda17n11, 3' ...   505   e-144  3
(AU060973) Dictyostelium discoideum slug cDNA, clone SLC441.       76   1e-21  2
(AU075000) Dictyostelium discoideum slug cDNA, clone SSM686.       76   2e-17  2
(BJ326655) Dictyostelium discoideum cDNA clone:dda17n11, 5' ...    76   2e-09  1
(AU038565) Dictyostelium discoideum slug cDNA, clone SSH874.       44   7e-05  2
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE015927_737(AE015927|pid:none) Clostridium tetani E88, complete...    34   4.6
protein update 2009. 1.21
PSORT 

 psg: 0.85  gvh: 0.27  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLC441 is cyt
5' end seq. ID SLC441F
5' end seq. 
>SLC441F.Seq
AATCCATATAAACACAATAGTATTAAATTTCACTATAATTTTTTTTTTTTTTTTTTAAAC
AAAAATAATAATTTAAAAAAAAAAAAAATAATAATAAATAATAAAAAAAAATAGTAAATA
ATAAATAATAAAAATAAAATAAATAATTTTTTTTTTTTTTCTTTTAATAAAATTAAATAT
ATCTTTTGTTATAAAAAAAAAAATAAA----------
Length of 5' end seq. 207
3' end seq. ID SLC441Z
3' end seq. 
>SLC441Z.Seq
----------TTTACAACATCACCATGAAGAATCAAAAAATAGTTCCAATCAATATTTCA
TATCACAACAACCAAATGCAAATTCAAAAATGGTACAATTGCAATCATCGCCATATGTAG
AAAGTCCAATTAAAGGTTTAACCGGTTCTGGTAGTGAAGTTATTAAAATTTATTTTAGAA
ATGATTCTTATAAATCTGTTAAAGTAACTGCATCAGATAATTGCCAATCCATAATTAGAG
TTATGTGCGAAAAATTCAATATGAAATCATTTGATAAATGTTTTGACCTTTGTGAAGTCA
TTAAAGGTCAAGTTAGATTCCTTCCACCAAATGACCTTTTATTAGAATCAAAATTAAAAA
ATTGGCCAATCATTTTAACAAATAACGGTTATGAAACTAATAATCATTGTCATTTTTCAA
TTGTAATTAAAAAAACAGCTCCAAAAGAAGCAATTAAATTATTTGAATCAATTTTATAAA
AAA
Length of 3' end seq. 473
Connected seq. ID SLC441P
Connected seq. 
>SLC441P.Seq
AATCCATATAAACACAATAGTATTAAATTTCACTATAATTTTTTTTTTTTTTTTTTAAAC
AAAAATAATAATTTAAAAAAAAAAAAAATAATAATAAATAATAAAAAAAAATAGTAAATA
ATAAATAATAAAAATAAAATAAATAATTTTTTTTTTTTTTCTTTTAATAAAATTAAATAT
ATCTTTTGTTATAAAAAAAAAAATAAA----------TTTACAACATCACCATGAAGAAT
CAAAAAATAGTTCCAATCAATATTTCATATCACAACAACCAAATGCAAATTCAAAAATGG
TACAATTGCAATCATCGCCATATGTAGAAAGTCCAATTAAAGGTTTAACCGGTTCTGGTA
GTGAAGTTATTAAAATTTATTTTAGAAATGATTCTTATAAATCTGTTAAAGTAACTGCAT
CAGATAATTGCCAATCCATAATTAGAGTTATGTGCGAAAAATTCAATATGAAATCATTTG
ATAAATGTTTTGACCTTTGTGAAGTCATTAAAGGTCAAGTTAGATTCCTTCCACCAAATG
ACCTTTTATTAGAATCAAAATTAAAAAATTGGCCAATCATTTTAACAAATAACGGTTATG
AAACTAATAATCATTGTCATTTTTCAATTGTAATTAAAAAAACAGCTCCAAAAGAAGCAA
TTAAATTATTTGAATCAATTTTATAAAAAA
Length of connected seq. 680
Full length Seq ID -
Full length Seq. -
Length of full length seq. -