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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC436
Library SL
(Link to library)
Clone ID SLC436
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16460-1
Original site URL
Representative seq. ID SLC436Z
(Link to Original site)
Representative DNA sequence 
>SLC436 (SLC436Q) /CSM/SL/SLC4-B/SLC436Q.Seq.d/
XXXXXXXXXXGTGTTGAAATCCAAGTCACTGGTCGTGTACCATCAATTGCTATCGATAAG
ACAAGTGGTTGTCAAATTTATCTCTCTAAAGATTCTTTAGAAACTGAAATCGTCTCTTCA
AAATCATCTGAAATGAATGTTTTAATTCCAGGTGCAACTGAAAATGATGATTTAGTTGAA
TTAGCTATTCCAGNNCAATATAAAACTTCTGTTAAAGGTAATAAATTACATACTGAATCA
ACTTCACATATTTAAAAAAAAAATTTTTTAAATTTATAAATAAAAAAAAAAAAATAAAAT
AAAAAAATAAAAAAAAATTAATAAATTTATATATATATATTTATATGTATTAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---VEIQVTGRVPSIAIDKTSGCQIYLSKDSLETEIVSSKSSEMNVLIPGATENDDLVEL
AIPXQYKTSVKGNKLHTESTSHI*kknflnl*ikkkk*nkkikkn**iyiyificik
Translated Amino Acid sequence (All Frames) 
Frame A:
---c*npshwsctincyr*dkwlsnlsl*rffrn*nrlfkii*necfnsrcn*k**fs*i
sysxxi*nfc*r**ity*inftylkkkffkfinkkkkik*knkkklinlyiyiymy*


Frame B:
---VEIQVTGRVPSIAIDKTSGCQIYLSKDSLETEIVSSKSSEMNVLIPGATENDDLVEL
AIPXQYKTSVKGNKLHTESTSHI*kknflnl*ikkkk*nkkikkn**iyiyificik


Frame C:
---lkskslvvyhqllsirqvvvkfislkil*klksslqnhlk*mf*fqvqlkmmi*ln*
lfqxniklllkvinyilnqlhifkkkif*iyk*kkknkikk*kkinkfiyiylyvl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL760 (VFL760Q) /CSM/VF/VFL7-C/VFL760Q.Seq.d/                        470   e-132
VFC876 (VFC876Q) /CSM/VF/VFC8-D/VFC876Q.Seq.d/                        470   e-132
SLI246 (SLI246Q) /CSM/SL/SLI2-B/SLI246Q.Seq.d/                        470   e-132
SLH572 (SLH572Q) /CSM/SL/SLH5-C/SLH572Q.Seq.d/                        470   e-132
SLH270 (SLH270Q) /CSM/SL/SLH2-C/SLH270Q.Seq.d/                        470   e-132
SLE391 (SLE391Q) /CSM/SL/SLE3-D/SLE391Q.Seq.d/                        470   e-132
SLE258 (SLE258Q) /CSM/SL/SLE2-C/SLE258Q.Seq.d/                        470   e-132
SLC773 (SLC773Q) /CSM/SL/SLC7-D/SLC773Q.Seq.d/                        470   e-132
SLC436 (SLC436Q) /CSM/SL/SLC4-B/SLC436Q.Seq.d/                        470   e-132
SLC360 (SLC360Q) /CSM/SL/SLC3-C/SLC360Q.Seq.d/                        470   e-132
own update 2004. 7.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U43027) Dictyostelium discoideum cyclase associated protein...   468   e-128  1
(AU284866) Dictyostelium discoideum gamete cDNA clone:FC-BN1...   468   e-128  1
(AU284483) Dictyostelium discoideum gamete cDNA clone:FC-AZ0...   468   e-128  1
(AU284348) Dictyostelium discoideum gamete cDNA clone:FC-AN2...   468   e-128  1
(AU284325) Dictyostelium discoideum gamete cDNA clone:FC-AL1...   468   e-128  1
(AU284261) Dictyostelium discoideum gamete cDNA clone:FC-AE2...   468   e-128  1
(AU075945) Dictyostelium discoideum slug cDNA, clone SSA180.      468   e-128  1
(AU061054) Dictyostelium discoideum slug cDNA, clone SLC773.      468   e-128  1
(AU053256) Dictyostelium discoideum slug cDNA, clone SLI246.      468   e-128  1
(AU039332) Dictyostelium discoideum slug cDNA, clone SLH572.      468   e-128  1
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54654) RecName: Full=Adenylyl cyclase-associated protein;     ...   153   2e-36
AE014134_215(AE014134|pid:none) Drosophila melanogaster chromoso...    91   1e-17
AF132566_1(AF132566|pid:none) Drosophila melanogaster LD24380 fu...    91   1e-17
AB014759_1(AB014759|pid:none) Arabidopsis thaliana mRNA for Atca...    88   1e-16
AK047701_1(AK047701|pid:none) Mus musculus adult male corpus str...    88   1e-16
(Q9CYT6) RecName: Full=Adenylyl cyclase-associated protein 2;   ...    88   1e-16
AK295600_1(AK295600|pid:none) Homo sapiens cDNA FLJ50529 complet...    87   2e-16
(Q5R5X8) RecName: Full=Adenylyl cyclase-associated protein 2;   ...    87   2e-16
AK293134_1(AK293134|pid:none) Homo sapiens cDNA FLJ50434 complet...    87   2e-16
AL034372_2(AL034372|pid:none) Human DNA sequence from clone RP1-...    87   2e-16
protein update 2009. 6. 1
PSORT 

 psg: 0.68  gvh: 0.33  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLC436 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC436Z
3' end seq. 
>SLC436Z.Seq
----------GTGTTGAAATCCAAGTCACTGGTCGTGTACCATCAATTGCTATCGATAAG
ACAAGTGGTTGTCAAATTTATCTCTCTAAAGATTCTTTAGAAACTGAAATCGTCTCTTCA
AAATCATCTGAAATGAATGTTTTAATTCCAGGTGCAACTGAAAATGATGATTTAGTTGAA
TTAGCTATTCCAGNNCAATATAAAACTTCTGTTAAAGGTAATAAATTACATACTGAATCA
ACTTCACATATTTAAAAAAAAAATTTTTTAAATTTATAAATAAAAAAAAAAAAATAAAAT
AAAAAAATAAAAAAAAATTAATAAATTTATATATATATATTTATATGTATTAAA
Length of 3' end seq. 344
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -