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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC435
Library SL
(Link to library)
Clone ID SLC435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID SLC435E
(Link to Original site)
Representative DNA sequence 
>SLC435 (SLC435Q) /CSM/SL/SLC4-B/SLC435Q.Seq.d/
GGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAG
ACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGA
AGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCAC
TTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGC
CTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGG
TAGTATAAATAATAGAGATTCTTTACAAGGTGCAAATATGTAAACAGAACAAAAAAAAAA
AAAAAAAAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
EIQSHPFFKGVDWRRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKIT
SFDIPFIGYTYRNFDAMRDAFGSVNSRDAFGSINSREAFGSINNRDSLQGANM*teqkkk
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
gdsissil*rcrlektkgnqtsnhsttlftnryfkf*sl*rgttt*tnatssikikkkdh
ffrypfhwlhls*f*cherclw*ckq*rclw*yk**rsfw*yk**rfftrckyvnrtkkk
kkkk


Frame B:
EIQSHPFFKGVDWRRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKIT
SFDIPFIGYTYRNFDAMRDAFGSVNSRDAFGSINSREAFGSINNRDSLQGANM*teqkkk
kkkk


Frame C:
rfnlihslkvsiged*gkpdlqsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeersl
lsislslvtlivilmp*emplvv*tvemplvv*ivekllvv*iieilykvqickqnkkkk
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI815 (SLI815Q) /CSM/SL/SLI8-A/SLI815Q.Seq.d/                        694   0.0
SLC435 (SLC435Q) /CSM/SL/SLC4-B/SLC435Q.Seq.d/                        694   0.0
SLC220 (SLC220Q) /CSM/SL/SLC2-A/SLC220Q.Seq.d/                        694   0.0
SLB337 (SLB337Q) /CSM/SL/SLB3-B/SLB337Q.Seq.d/                        694   0.0
SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                        686   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                        678   0.0
CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                        672   0.0
SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                        664   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                        664   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                        624   e-178
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053513) Dictyostelium discoideum slug cDNA, clone SLI815.      694   0.0    1
(AU034495) Dictyostelium discoideum slug cDNA, clone SLC220.      694   0.0    1
(AU034277) Dictyostelium discoideum slug cDNA, clone SLC435.      694   0.0    1
(AU033705) Dictyostelium discoideum slug cDNA, clone SLB337.      694   0.0    1
(C93344) Dictyostelium discoideum slug cDNA, clone SSM651.        686   0.0    1
(BJ372403) Dictyostelium discoideum cDNA clone:ddc12b14, 3' ...   672   0.0    1
(BJ375552) Dictyostelium discoideum cDNA clone:ddc19k02, 3' ...   581   0.0    2
(C90656) Dictyostelium discoideum slug cDNA, clone SSI880.        664   0.0    1
(BJ408408) Dictyostelium discoideum cDNA clone:dds45p18, 3' ...   664   0.0    1
(BJ435932) Dictyostelium discoideum cDNA clone:ddv29c01, 3' ...   589   e-172  3
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...    70   2e-11
T25808(T25808)hypothetical protein K08B12.5 - Caenorhabditis ele...    66   3e-10
AM473649_2(AM473649|pid:none) Vitis vinifera contig VV78X065883....    66   4e-10
FB811448_1(FB811448|pid:none) Sequence 30721 from Patent WO20080...    65   6e-10
AC007060_9(AC007060|pid:none) Arabidopsis thaliana chromosome 1 ...    65   6e-10
FB811474_1(FB811474|pid:none) Sequence 30747 from Patent WO20080...    65   6e-10
AC142507_3(AC142507|pid:none) Medicago truncatula clone mth2-30h...    65   1e-09
S42864(S42864)protein kinase (EC 2.7.1.-) - common ice plant (fr...    64   1e-09
AC108873_10(AC108873|pid:none) Oryza sativa (japonica cultivar-g...    64   2e-09
U97001_5(U97001|pid:none) Caenorhabditis elegans cosmid K08B12, ...    64   2e-09
protein update 2009. 7. 4
PSORT 

 psg: 0.36  gvh: 0.37  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLC435 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC435E
Full length Seq. 
>SLC435E.Seq
GGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAG
ACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGA
AGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCAC
TTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGC
CTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGCTTTTGG
TAGTATAAATAATAGAGATTCTTTACAAGGTGCAAATATGTAAACAGAACAAAAAAAAAA
AAAAAAAAAAAAA
Length of full length seq. 373