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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC434
Library SL
(Link to library)
Clone ID SLC434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15434-1
Original site URL
Representative seq. ID SLC434Z
(Link to Original site)
Representative DNA sequence 
>SLC434 (SLC434Q) /CSM/SL/SLC4-B/SLC434Q.Seq.d/
XXXXXXXXXXTGGTCACTTTGATTGTGAAATCGATGTCGCTTGGTTAAACGCCAACGCAA
CAAAAGATACCGTCAAACCACAAGTTGACCGTTACACCCTTGCCAACGGTGTCCACATCA
TCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACTGGTCATCCATCTTTTG
TTATGTCAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCCCTCTGGACTAAAACTG
AAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAAGTTGCTCGTT
TACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAATCCGAATATT
TATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAAAATCTTTTGT
TTAATAAATATATAAAACTTTTTTAACA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---GHFDCEIDVAWLNANATKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGTGHPSFV
MSNSFCNQTLAQIALWTKTEEYPLGVHFLPKILDEEVARLHLDQLGAKLTTLTEKQSEYL
SVPVAGPYKVDHYRY*nllfnkyiklf*
Translated Amino Acid sequence (All Frames) 
Frame A:
---GHFDCEIDVAWLNANATKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGTGHPSFV
MSNSFCNQTLAQIALWTKTEEYPLGVHFLPKILDEEVARLHLDQLGAKLTTLTEKQSEYL
SVPVAGPYKVDHYRY*nllfnkyiklf*


Frame B:
---vtlivksmslg*tptqqkipsnhkltvtplptvstsss*lkvvssi*vvvlvihlll
cqtlsvtkl*lkspsglklknth*vstsyqrf*mkkllvyi*in*vln*lpslknnpniy
qfqslvhtklittdikifclini*nffn


Frame C:
---sl*l*nrcrlvkrqrnkryrqtts*plhpcqrcphhpls*rssrqfrlwywssifcy
vklfl*pnfssnrpld*n*ripircplltkdfr*rscsftfrsirc*inyph*ktirifi
sssrwsiqs*slqilksfv**iyktflt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC434 (SLC434Q) /CSM/SL/SLC4-B/SLC434Q.Seq.d/                        868   0.0
VSE832 (VSE832Q) /CSM/VS/VSE8-B/VSE832Q.Seq.d/                        852   0.0
SLK569 (SLK569Q) /CSM/SL/SLK5-C/SLK569Q.Seq.d/                        852   0.0
SLI719 (SLI719Q) /CSM/SL/SLI7-A/SLI719Q.Seq.d/                        852   0.0
SLI580 (SLI580Q) /CSM/SL/SLI5-D/SLI580Q.Seq.d/                        852   0.0
SLI320 (SLI320Q) /CSM/SL/SLI3-A/SLI320Q.Seq.d/                        852   0.0
SLI307 (SLI307Q) /CSM/SL/SLI3-A/SLI307Q.Seq.d/                        852   0.0
SLI165 (SLI165Q) /CSM/SL/SLI1-C/SLI165Q.Seq.d/                        852   0.0
SLH831 (SLH831Q) /CSM/SL/SLH8-B/SLH831Q.Seq.d/                        852   0.0
SLH447 (SLH447Q) /CSM/SL/SLH4-B/SLH447Q.Seq.d/                        852   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034276) Dictyostelium discoideum slug cDNA, clone SLC434.      868   0.0    1
(AU285050) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   852   0.0    1
(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...   852   0.0    1
(AU284257) Dictyostelium discoideum gamete cDNA clone:FC-AE1...   852   0.0    1
(AU263412) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU054085) Dictyostelium discoideum slug cDNA, clone SLK569.      852   0.0    1
(AU053472) Dictyostelium discoideum slug cDNA, clone SLI719.      852   0.0    1
(AU053407) Dictyostelium discoideum slug cDNA, clone SLI580.      852   0.0    1
(AU053288) Dictyostelium discoideum slug cDNA, clone SLI320.      852   0.0    1
(AU053279) Dictyostelium discoideum slug cDNA, clone SLI307.      852   0.0    1
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim...   271   7e-72
X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden...   252   3e-66
(P27604) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   211   8e-54
(O13639) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   205   3e-52
DQ167408_1(DQ167408|pid:none) Volvariella volvacea S-adenosyl-L-...   204   6e-52
AY278950_1(AY278950|pid:none) Branchiostoma belcheri tsingtaunes...   204   8e-52
AB282637_1(AB282637|pid:none) Plutella xylostella pxAhh mRNA for...   202   4e-51
DQ676850_1(DQ676850|pid:none) Pimephales promelas S-adenosylhomo...   201   5e-51
(Q27580) RecName: Full=Adenosylhomocysteinase;          Short=Ad...   201   6e-51
AY398307_1(AY398307|pid:none) Danio rerio clone RK113A3C03 S-ade...   198   5e-50
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLC434 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC434Z
3' end seq. 
>SLC434Z.Seq
----------TGGTCACTTTGATTGTGAAATCGATGTCGCTTGGTTAAACGCCAACGCAA
CAAAAGATACCGTCAAACCACAAGTTGACCGTTACACCCTTGCCAACGGTGTCCACATCA
TCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACTGGTCATCCATCTTTTG
TTATGTCAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCCCTCTGGACTAAAACTG
AAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAAGTTGCTCGTT
TACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAATCCGAATATT
TATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAAAATCTTTTGT
TTAATAAATATATAAAACTTTTTTAACA
Length of 3' end seq. 438
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -