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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC433
Library SL
(Link to library)
Clone ID SLC433
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLC433Z
(Link to Original site)
Representative DNA sequence 
>SLC433 (SLC433Q) /CSM/SL/SLC4-B/SLC433Q.Seq.d/
XXXXXXXXXXAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATA
AATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTT
CATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATA
GTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGNTCTCCAACTGAATTGG
ATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTAT
TAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTG
ATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCAT
GGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATT
GTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATA
GGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATA
AAAATAATAATTTCTAATTGTAT
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---SSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNS
FQLYTSGIYYEPKXSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSD
DSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnr
rmfgsi**pemffy*knknknnnf*ly
Translated Amino Acid sequence (All Frames) 
Frame A:
---SSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNS
FQLYTSGIYYEPKXSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSD
DSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnr
rmfgsi**pemffy*knknknnnf*ly


Frame B:
---vvihillklvqhvysinlilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiiv
snsihlvsimsqnxlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplm
ihlivldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*ig
ecldlssnlkcfsikkikikiiisnc


Frame C:
---*lsiyc*nwfnmfiq*i*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**f
ptlyiwyll*akmxsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**
fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*e
nvwiylvt*nvfllkk*k*k**fliv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1134   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                       1134   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1134   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                       1134   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1134   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1134   0.0
SSG365 (SSG365Q) /CSM/SS/SSG3-C/SSG365Q.Seq.d/                       1134   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1134   0.0
SSC639 (SSC639Q) /CSM/SS/SSC6-B/SSC639Q.Seq.d/                       1134   0.0
SSA431 (SSA431Q) /CSM/SS/SSA4-B/SSA431Q.Seq.d/                       1134   0.0
own update 2000. 8.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1134   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.     1134   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.     1134   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.     1134   0.0    1
(AU034279) Dictyostelium discoideum slug cDNA, clone SLC437.     1134   0.0    1
(AU034275) Dictyostelium discoideum slug cDNA, clone SLC433.     1134   0.0    1
(AU033994) Dictyostelium discoideum slug cDNA, clone SLB708.     1134   0.0    1
(AU033721) Dictyostelium discoideum slug cDNA, clone SLB357.     1134   0.0    1
(C94406) Dictyostelium discoideum slug cDNA, clone SSK657.       1134   0.0    1
(C94281) Dictyostelium discoideum slug cDNA, clone SSK734.       1134   0.0    1
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   326   3e-88
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   166   5e-40
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   166   5e-40
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   150   2e-35
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   150   3e-35
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   150   3e-35
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   150   3e-35
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   149   6e-35
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   148   1e-34
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   147   3e-34
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SLC433 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC433Z
3' end seq. 
>SLC433Z.Seq
----------AAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATA
AATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTT
CATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATA
GTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGNTCTCCAACTGAATTGG
ATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTAT
TAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTG
ATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCAT
GGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATT
GTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATA
GGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATA
AAAATAATAATTTCTAATTGTAT
Length of 3' end seq. 613
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -