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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC431
Library SL
(Link to library)
Clone ID SLC431
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15865-1
Original site URL
Representative seq. ID SLC431Z
(Link to Original site)
Representative DNA sequence 
>SLC431 (SLC431Q) /CSM/SL/SLC4-B/SLC431Q.Seq.d/
XXXXXXXXXXCATATATGGCAAATCATTTTGTGATTCTGCAAAATCAACATTTACAATGT
TTGAAAATCGTTTAGGTTCAACAATTATCAATGACAACTTTGTTGGTACAACCATTGCCA
TCGGTGGTTTAGTTGCATCTCTTTTATTATCAATTTTGGGTGCTCTAATTTCAATTCCAT
TCGATATGTCAGTCTATGGTAANNCACTAGCTTTATTCATTTGTTACTTGGTTATCATTA
CAAACTTGGAATTAGTTTATAGTTCAACAATATCATTATTTGTTTGTTATGTTATGGAAC
CAGAAGTTTTAGCTCATACAAAACCACAATTGTATCAACTCTATTCTTCAACTTATCATT
TAAGATAAATCATTTTTAATTAAAAAAAAAAAATTAAAAAAAAAAATAAAAAAAT
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---IYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIGGLVASLLLSILGALISIPF
DMSVYGXXLALFICYLVIITNLELVYSSTISLFVCYVMEPEVLAHTKPQLYQLYSSTYHL
R*iifn*kkkikkknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---IYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIGGLVASLLLSILGALISIPF
DMSVYGXXLALFICYLVIITNLELVYSSTISLFVCYVMEPEVLAHTKPQLYQLYSSTYHL
R*iifn*kkkikkknkk


Frame B:
---ymanhfvilqnqhlqclkiv*vqqlsmttllvqplpsvv*lhlfyyqfwvl*fqfhs
icqsmvxh*lysfvtwlslqtwn*fivqqyhylfvmlwnqkf*liqnhncinsilqlii*
dksflikkkklkkkikk


Frame C:
---iwqiil*fckiniynv*ksfrfnnyq*qlcwynhchrwfscisfiinfgcsnfnsir
yvslw*xtsfihlllgyhyklgisl*fnniiicllcygtrsfssykttivstlffnlsfk
inhf*lkkkn*kkk*kn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC431 (SLC431Q) /CSM/SL/SLC4-B/SLC431Q.Seq.d/                        724   0.0
SSG424 (SSG424Q) /CSM/SS/SSG4-A/SSG424Q.Seq.d/                        684   0.0
SLI689 (SLI689Q) /CSM/SL/SLI6-D/SLI689Q.Seq.d/                        684   0.0
SLE694 (SLE694Q) /CSM/SL/SLE6-D/SLE694Q.Seq.d/                        684   0.0
SLD359 (SLD359Q) /CSM/SL/SLD3-C/SLD359Q.Seq.d/                        684   0.0
SLB215 (SLB215Q) /CSM/SL/SLB2-A/SLB215Q.Seq.d/                        684   0.0
SLB164 (SLB164Q) /CSM/SL/SLB1-C/SLB164Q.Seq.d/                        684   0.0
SFG709 (SFG709Q) /CSM/SF/SFG7-A/SFG709Q.Seq.d/                        670   0.0
AFM255 (AFM255Q) /CSM/AF/AFM2-C/AFM255Q.Seq.d/                        666   0.0
SFB313 (SFB313Q) /CSM/SF/SFB3-A/SFB313Q.Seq.d/                        654   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034273) Dictyostelium discoideum slug cDNA, clone SLC431.      724   0.0    1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   684   0.0    1
(AU053457) Dictyostelium discoideum slug cDNA, clone SLI689.      684   0.0    1
(AU052462) Dictyostelium discoideum slug cDNA, clone SLD359.      684   0.0    1
(AU034923) Dictyostelium discoideum slug cDNA, clone SLE694.      684   0.0    1
(AU033599) Dictyostelium discoideum slug cDNA, clone SLB215.      684   0.0    1
(AU033556) Dictyostelium discoideum slug cDNA, clone SLB164.      684   0.0    1
(C94113) Dictyostelium discoideum slug cDNA, clone SSG424.        684   0.0    1
(BJ346955) Dictyostelium discoideum cDNA clone:dda25m14, 3' ...   666   0.0    1
(BJ400610) Dictyostelium discoideum cDNA clone:dds14b03, 3' ...   650   0.0    2
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869R1) RecName: Full=CTL-like protein DDB_G0274487;  &AC116957...   180   1e-44
(Q55CN8) RecName: Full=CTL-like protein DDB_G0269978;                  50   2e-05
(Q6C938) RecName: Full=Protein PNS1;  &CR382130_586(CR382130|pid...    39   0.071
(Q5KQ32) RecName: Full=Protein PNS1;  &AE017341_69(AE017341|pid:...    33   3.0
AP007161_701(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    33   3.9
FM992688_24(FM992688|pid:none) Candida dubliniensis CD36 chromos...    33   3.9
(Q5AB93) RecName: Full=Protein PNS1;                                   32   5.1
AM494972_245(AM494972|pid:none) Leishmania braziliensis chromoso...    32   6.6
protein update 2009. 6. 1
PSORT 

 psg: 0.76  gvh: 0.68  alm: 0.22  top: 0.53  tms: 0.13  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SLC431 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC431Z
3' end seq. 
>SLC431Z.Seq
----------CATATATGGCAAATCATTTTGTGATTCTGCAAAATCAACATTTACAATGT
TTGAAAATCGTTTAGGTTCAACAATTATCAATGACAACTTTGTTGGTACAACCATTGCCA
TCGGTGGTTTAGTTGCATCTCTTTTATTATCAATTTTGGGTGCTCTAATTTCAATTCCAT
TCGATATGTCAGTCTATGGTAANNCACTAGCTTTATTCATTTGTTACTTGGTTATCATTA
CAAACTTGGAATTAGTTTATAGTTCAACAATATCATTATTTGTTTGTTATGTTATGGAAC
CAGAAGTTTTAGCTCATACAAAACCACAATTGTATCAACTCTATTCTTCAACTTATCATT
TAAGATAAATCATTTTTAATTAAAAAAAAAAAATTAAAAAAAAAAATAAAAAAAT
Length of 3' end seq. 405
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -