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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC426
Library SL
(Link to library)
Clone ID SLC426
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14991-1
Original site URL
Representative seq. ID SLC426E
(Link to Original site)
Representative DNA sequence 
>SLC426 (SLC426Q) /CSM/SL/SLC4-B/SLC426Q.Seq.d/
AAATAATAAATAGTAAATAATAAATAATAATAAATAATAATAATAATATTTNAAAATGGG
TCATCACCACCACTATGCTTATACAACCACAACTCCATATATCATGCCAGGAGTTCCTCC
ACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGTTCCACCTCCAATGGGTATCGT
TCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACCAGTTGTCTNTGGTGCTCCTCC
ACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATTCTATCCACCATCCTATTATTA
GAAGCAATATCAACTAACAATTATCAATGAGCAAC
sequence update 1999. 7.13
Translated Amino Acid sequence 
k**ivnnk***IIIIIFXNGSSPPLCLYNHNSIYHARSSSTSCLWCSSTNDGSSTSNGYR
STTSIRSRHGPSTSCLWCSSTNDGSSTSNGPTILSTILLLEAISTNNYQ*a
Translated Amino Acid sequence (All Frames) 
Frame A:
k**ivnnk***IIIIIFXNGSSPPLCLYNHNSIYHARSSSTSCLWCSSTNDGSSTSNGYR
STTSIRSRHGPSTSCLWCSSTNDGSSTSNGPTILSTILLLEAISTNNYQ*a


Frame B:
nnk**iinnnk****yxkmghhhhyayttttpyimpgvpppvvygapppmmvvpppmgiv
qpqvfvqgmvpppvvxgapppmmgvpppmgqpfyppsyy*kqyqltiineq


Frame C:
iinsk**iiinnnnnixkwvitttmliqpqlhiscqeflhqlsmvllhq*w*fhlqwvsf
nhkysfkawslhqlsxvllhq*wefhlqwanhsihhpiirsnin*qlsmsn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC426 (SLC426Q) /CSM/SL/SLC4-B/SLC426Q.Seq.d/                        557   e-158
FC-BC11 (FC-BC11Q) /CSM/FC/FC-BC/FC-BC11Q.Seq.d/                      557   e-158
AFH440 (AFH440Q) /CSM/AF/AFH4-B/AFH440Q.Seq.d/                        557   e-158
SSC422 (SSC422Q) /CSM/SS/SSC4-A/SSC422Q.Seq.d/                        125   5e-28
SFH328 (SFH328Q) /CSM/SF/SFH3-B/SFH328Q.Seq.d/                         42   0.005
SSK192 (SSK192Q) /CSM/SS/SSK1-D/SSK192Q.Seq.d/                         38   0.081
CHR770 (CHR770Q) /CSM/CH/CHR7-C/CHR770Q.Seq.d/                         38   0.081
CFD736 (CFD736Q) /CSM/CF/CFD7-B/CFD736Q.Seq.d/                         38   0.081
AHK164 (AHK164Q) /CSM/AH/AHK1-C/AHK164Q.Seq.d/                         38   0.081
VSK425 (VSK425Q) /CSM/VS/VSK4-B/VSK425Q.Seq.d/                         34   1.3
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116961) Dictyostelium discoideum chromosome 2 map 369654-...   557   e-155  1
(AU060969) Dictyostelium discoideum slug cDNA, clone SLC426.      557   e-155  1
(AU034270) Dictyostelium discoideum slug cDNA, clone SLC426.      557   e-155  1
(C25716) Dictyostelium discoideum gamete cDNA, clone FC-BC11.     557   e-155  1
(BJ326151) Dictyostelium discoideum cDNA clone:dda15p10, 5' ...   557   e-155  1
(BJ342931) Dictyostelium discoideum cDNA clone:dda15p10, 3' ...   504   e-138  1
(AU071738) Dictyostelium discoideum slug cDNA, clone SSC422.      125   1e-24  1
(DN607650) EST02861 Sporophyte cDNA Library Porphyra haitane...    44   0.014  2
(DN605249) EST00460 Sporophyte cDNA Library Porphyra haitane...    38   0.062  2
(ED397229) AUAC-aaw14h07.g1 Ascaris suum whole genome shotgu...    30   1.5    3
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000099_1947(CP000099|pid:none) Methanosarcina barkeri str. Fus...    35   0.83
CP000086_131(CP000086|pid:none) Burkholderia thailandensis E264 ...    35   1.1
CP000151_3285(CP000151|pid:none) Burkholderia sp. 383 chromosome...    34   1.8
CP000301_2702(CP000301|pid:none) Rhodopseudomonas palustris BisB...    34   1.8
AC139706_7(AC139706|pid:none) Medicago truncatula clone mth2-28n...    33   2.4
CP001503_3257(CP001503|pid:none) Burkholderia glumae BGR1 chromo...    33   2.4
CP000440_3166(CP000440|pid:none) Burkholderia ambifaria AMMD chr...    33   3.2
CP001025_3034(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    33   3.2
CP000958_3116(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ...    33   3.2
CP001052_285(CP001052|pid:none) Burkholderia phytofirmans PsJN c...    33   4.1
protein update 2009. 7. 4
PSORT 

 psg: 0.90  gvh: 0.49  alm: 0.37  top: 0.60  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 40.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SLC426 is mit
5' end seq. ID SLC426F
5' end seq. 
>SLC426F.Seq
AAATAATAAATAGTAAATAATAAATAATAATAAATAATAATAATAATATTTAAAAATGGG
TCATCACCACCACTATGCTTATACAACCACAACTCCATATATCATGCCAGGAGTTCCTCC
ACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGTTCCACCTCCAATGGGTATCGT
TCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACCAGTTGTCTGTGGTGCTCCTCC
ACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATTCTATCCACCATCCTATTATTA
GAAGCAATATCAACTAACAATTATCAATGAGCAAC
Length of 5' end seq. 335
3' end seq. ID SLC426Z
3' end seq. 
>SLC426Z.Seq
----------AATAATAAATAATAATAAATAATAATAATAATATTTTAAAATGGGTCATC
ACCACCACTATGCTTATACAACCACAACTCCATATATCATGCCAGGAGTTCCTCCACCAG
TTGTCTATGGTGCTCCTCCACCAATGATGGTAGTTCCACCTCCAATGGGTATCGTTCAAC
CACAAGTATTCGTTCAAGGCATGGTCCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAA
TGATGGGAGTTCCACCTCCAATGGGCCAACCATTCTATCCACCATCCTATTATTAGAAGC
AATATCAACTAACAATTATCAATGAGCAAC
Length of 3' end seq. 320
Connected seq. ID SLC426P
Connected seq. 
>SLC426P.Seq
AAATAATAAATAGTAAATAATAAATAATAATAAATAATAATAATAATATTTAAAAATGGG
TCATCACCACCACTATGCTTATACAACCACAACTCCATATATCATGCCAGGAGTTCCTCC
ACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGTTCCACCTCCAATGGGTATCGT
TCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACCAGTTGTCTGTGGTGCTCCTCC
ACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATTCTATCCACCATCCTATTATTA
GAAGCAATATCAACTAACAATTATCAATGAGCAAC----------AATAATAAATAATAA
TAAATAATAATAATAATATTTTAAAATGGGTCATCACCACCACTATGCTTATACAACCAC
AACTCCATATATCATGCCAGGAGTTCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAAT
GATGGTAGTTCCACCTCCAATGGGTATCGTTCAACCACAAGTATTCGTTCAAGGCATGGT
CCCTCCACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGGAGTTCCACCTCCAATGGG
CCAACCATTCTATCCACCATCCTATTATTAGAAGCAATATCAACTAACAATTATCAATGA
GCAAC
Length of connected seq. 655
Full length Seq ID SLC426E
Full length Seq. 
>SLC426E.Seq
AAATAATAAATAGTAAATAATAAATAATAATAAATAATAATAATAATATTTNAAAATGGG
TCATCACCACCACTATGCTTATACAACCACAACTCCATATATCATGCCAGGAGTTCCTCC
ACCAGTTGTCTATGGTGCTCCTCCACCAATGATGGTAGTTCCACCTCCAATGGGTATCGT
TCAACCACAAGTATTCGTTCAAGGCATGGTCCCTCCACCAGTTGTCTNTGGTGCTCCTCC
ACCAATGATGGGAGTTCCACCTCCAATGGGCCAACCATTCTATCCACCATCCTATTATTA
GAAGCAATATCAACTAACAATTATCAATGAGCAAC
Length of full length seq. 335