SLC425
Library SL
(Link to library)
Clone ID SLC425
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16276-1
Original site URL
Representative seq. ID SLC425Z
(Link to Original site)
Representative DNA sequence
>SLC425 (SLC425Q) /CSM/SL/SLC4-B/SLC425Q.Seq.d/
XXXXXXXXXXCCCATTAGATGAATTAGCTCCATCAACCTTTGTTTTGGATGAATTCAAAC
GTACCTACTCCAACAATGAAGTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACA
AGGAAGGTTTCTCTGTCTACCAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCT
TCAAAACTTGCAACTTGGTTGGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACG
CTTTCGCCTCTATGATCATTTTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCG
TCTCTGGTCTCTGGGTTTTCCGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATG
ATTCTTTAGTCTATGACTGGAAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAAT
CTTTCCTTGCTTGGGAAGATAAAAACGGTGGTTTCGCTGGTAAGAAAATCTTACAAGGTA
AATTATACAAATAAATTAATTTAAATTTAATTTAAAAAAAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence
---PLDELAPSTFVLDEFKRTYSNNEVSMSIPWFFEHFDKEGFSVYQCTYQYNHELGPVF
KTCNLVGGFFQRLETLHKYAFASMIIFGEEQGGAVKDQTVSGLWVFRGQDLPADMKDCDD
SLVYDWKKLDVAADKAIIESFLAWEDKNGGFAGKKILQGKLYK*inlnli*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---PLDELAPSTFVLDEFKRTYSNNEVSMSIPWFFEHFDKEGFSVYQCTYQYNHELGPVF
KTCNLVGGFFQRLETLHKYAFASMIIFGEEQGGAVKDQTVSGLWVFRGQDLPADMKDCDD
SLVYDWKKLDVAADKAIIESFLAWEDKNGGFAGKKILQGKLYK*inlnli*kkk


Frame B:
---h*mn*lhqplfwmnsnvptptmkspcpfhgslntltrkvslstnvptntitn*vqss
klatwlvvsskdsklstntlspl*sfsvknkvvpskikpslvsgfsvvkiyqlt*kivmi
l*smtgrnsmllliklslnlsllgkiktvvslvrksykvnytnkli*i*fkkkk


Frame C:
---ir*issinlcfg*iqtyllqq*slhvhsmvl*tl*qgrflclpmylpiqsrirsslq
nlqlgwwflpktrnspqirfrlydhfr*rtrwcrqrsnrlwslgfpwsrfts*herl**f
fsl*leetrccc**syh*ifpclgr*krwfrw*enltr*iiqin*fkfnlkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC425 (SLC425Q) /CSM/SL/SLC4-B/SLC425Q.Seq.d/ 997 0.0
VFL213 (VFL213Q) /CSM/VF/VFL2-A/VFL213Q.Seq.d/ 989 0.0
SLH694 (SLH694Q) /CSM/SL/SLH6-D/SLH694Q.Seq.d/ 989 0.0
SLH615 (SLH615Q) /CSM/SL/SLH6-A/SLH615Q.Seq.d/ 989 0.0
SLG662 (SLG662Q) /CSM/SL/SLG6-C/SLG662Q.Seq.d/ 989 0.0
SLF370 (SLF370Q) /CSM/SL/SLF3-C/SLF370Q.Seq.d/ 989 0.0
SLF351 (SLF351Q) /CSM/SL/SLF3-C/SLF351Q.Seq.d/ 989 0.0
SLF228 (SLF228Q) /CSM/SL/SLF2-B/SLF228Q.Seq.d/ 989 0.0
SLF226 (SLF226Q) /CSM/SL/SLF2-B/SLF226Q.Seq.d/ 989 0.0
SLE891 (SLE891Q) /CSM/SL/SLE8-D/SLE891Q.Seq.d/ 989 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034269) Dictyostelium discoideum slug cDNA, clone SLC425. 997 0.0 1
(AU284390) Dictyostelium discoideum gamete cDNA clone:FC-AR0... 989 0.0 1
(AU284382) Dictyostelium discoideum gamete cDNA clone:FC-AQ1... 989 0.0 1
(AU284283) Dictyostelium discoideum gamete cDNA clone:FC-AH1... 989 0.0 1
(AU052950) Dictyostelium discoideum slug cDNA, clone SLF370. 989 0.0 1
(AU052937) Dictyostelium discoideum slug cDNA, clone SLF351. 989 0.0 1
(AU052864) Dictyostelium discoideum slug cDNA, clone SLF228. 989 0.0 1
(AU052863) Dictyostelium discoideum slug cDNA, clone SLF226. 989 0.0 1
(AU052454) Dictyostelium discoideum slug cDNA, clone SLD345. 989 0.0 1
(AU052342) Dictyostelium discoideum slug cDNA, clone SLD170. 989 0.0 1
dna update 2009. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ448229_1(DQ448229|pid:none) Artemia franciscana clone 13RP10.0... 139 5e-32
(P12261) RecName: Full=Elongation factor 1-gamma; Short... 138 7e-32
BC134217_1(BC134217|pid:none) Danio rerio zgc:163074, mRNA (cDNA... 138 9e-32
AY737542_1(AY737542|pid:none) Toxoptera citricida putative trans... 137 1e-31
(Q6PE25) RecName: Full=Elongation factor 1-gamma; Short... 137 2e-31
AY099512_1(AY099512|pid:none) Danio rerio eukaryotic translation... 137 2e-31
AF148813_1(AF148813|pid:none) Drosophila melanogaster translatio... 136 3e-31
(Q9NJH0) RecName: Full=Elongation factor 1-gamma; Short... 136 3e-31
BT001612_1(BT001612|pid:none) Drosophila melanogaster RE32823 fu... 136 3e-31
AF148814_1(AF148814|pid:none) Drosophila melanogaster translatio... 136 3e-31
protein update 2009. 6. 1
PSORT

psg: 0.75 gvh: 0.32 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
20.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SLC425 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC425Z
3' end seq.
>SLC425Z.Seq
----------CCCATTAGATGAATTAGCTCCATCAACCTTTGTTTTGGATGAATTCAAAC
GTACCTACTCCAACAATGAAGTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACA
AGGAAGGTTTCTCTGTCTACCAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCT
TCAAAACTTGCAACTTGGTTGGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACG
CTTTCGCCTCTATGATCATTTTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCG
TCTCTGGTCTCTGGGTTTTCCGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATG
ATTCTTTAGTCTATGACTGGAAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAAT
CTTTCCTTGCTTGGGAAGATAAAAACGGTGGTTTCGCTGGTAAGAAAATCTTACAAGGTA
AATTATACAAATAAATTAATTTAAATTTAATTTAAAAAAAAAAAA
Length of 3' end seq. 515
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -