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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC424
Library SL
(Link to library)
Clone ID SLC424
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08784-1
Original site URL
Representative seq. ID SLC424P
(Link to Original site)
Representative DNA sequence 
>SLC424 (SLC424Q) /CSM/SL/SLC4-A/SLC424Q.Seq.d/
GGATATTATAATTTCAAATTAAGTTTTATAAATTTGAAATAATATTGAAAAAAAAAAAAA
ATAAAAAAAATAAAATAAATAAATAAATAAATAAATAAATAAATAAATACGTTGTAAATC
AAATTCTTTAATAATACTAGTAATAATAAATAAAAATAATAATAAATAAXXXXXXXXXXT
TTCCCAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGATG
GATGTTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAAAG
TCAAAACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTGAT
CCATCATCTGTCATTGAACCAGGTTGTTTAATTGGCCCAAACGTAACAATTGGTCCAAAT
TGTGTTATTCAAGAAGGTACTCGTTTAGTTAATACAACAGTTTTAGAGGGTACTACAATT
GGTAAAAACTCTTGGATCAAATCTACTATCATTGGTTGGAACTCTTCAATTGGTAAATGG
GTTAGAATGGAAAATACCTCTGTTCTCGGTGAAGATGTTCATGTTTCTGATGAACTTTAC
ATTAATGGTGGTAAAATTTTACCACATAAATCAATTACTTCTTCAATACCTGAACCTGAA
ATTATTATGTAAATCAATCAATCAATAAATCAATAAATCAATCAATCAATCAAAAAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
il*fqikfykfeiilkkkknkknkink*ink*inkyvvnqil**y****IKIIIN---

---FPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSKQPELLATGNGIIGPV
LIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGKNSWIKSTIIGWNSSI
GKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEIIM*inqsinq*inqsi
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
gyynfklsfinlk*y*kkkkikkik*ink*ink*intl*ikffnntsnnk*k***i---

---fpsngsr*siilyaigrildgcwstkrlfirygiifkfikvkttrtlsywqwyywts
fn*siich*trlfnwpkrnnwsklcysrrysfs*ynsfrgyynw*klldqiyyhwlelfn
w*mg*ngkylcsr*rcscf**tlh*ww*nftt*inyffnt*t*nyyvnqsinksinqsin
qk

Frame B:
diiisn*vl*i*nniekkkk*kk*nk*ink*ink*ircksnsliilviinknnnk*---

---FPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSKQPELLATGNGIIGPV
LIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGKNSWIKSTIIGWNSSI
GKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEIIM*inqsinq*inqsi
kk

Frame C:
il*fqikfykfeiilkkkknkknkink*ink*inkyvvnqil**y****IKIIIN---

---sqqwqqivnyivcnwkdfgwmlvnqktfyqvwdyi*ih*sqnnqns*llamvlldqf
*lihhlslnqvv*laqt*qlvqivlfkkvlv*liqqf*rvlqlvktlgsnllslvgtlql
vnglewkiplfsvkmfmflmnftlmvvkfyhinqlllqylnlkllcksinq*inksinqs
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC424 (SLC424Q) /CSM/SL/SLC4-A/SLC424Q.Seq.d/                        971   0.0
SSD715 (SSD715Q) /CSM/SS/SSD7-A/SSD715Q.Seq.d/                        908   0.0
AFE530 (AFE530Q) /CSM/AF/AFE5-B/AFE530Q.Seq.d/                        807   0.0
VFI845 (VFI845Q) /CSM/VF/VFI8-B/VFI845Q.Seq.d/                        771   0.0
AFK424 (AFK424Q) /CSM/AF/AFK4-A/AFK424Q.Seq.d/                        636   0.0
AFO866 (AFO866Q) /CSM/AF/AFO8-C/AFO866Q.Seq.d/                        438   e-122
AFN134 (AFN134Q) /CSM/AF/AFN1-B/AFN134Q.Seq.d/                        434   e-121
AFH849 (AFH849Q) /CSM/AF/AFH8-C/AFH849Q.Seq.d/                        434   e-121
AFO768 (AFO768Q) /CSM/AF/AFO7-C/AFO768Q.Seq.d/                        416   e-115
AFN736 (AFN736Q) /CSM/AF/AFN7-B/AFN736Q.Seq.d/                        383   e-105
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034544) Dictyostelium discoideum slug cDNA, clone SLC424.      973   0.0    1
(AU037501) Dictyostelium discoideum slug cDNA, clone SSD715.      878   0.0    2
(BJ339787) Dictyostelium discoideum cDNA clone:dda10k07, 3' ...   751   0.0    3
(BJ432330) Dictyostelium discoideum cDNA clone:ddv18j12, 3' ...   771   0.0    1
(BJ344986) Dictyostelium discoideum cDNA clone:dda21p06, 3' ...   636   e-178  1
(BJ346309) Dictyostelium discoideum cDNA clone:dda30d18, 3' ...   438   e-118  1
(BJ347491) Dictyostelium discoideum cDNA clone:dda27c09, 3' ...   434   e-117  1
(BJ343574) Dictyostelium discoideum cDNA clone:dda16b14, 3' ...   434   e-117  1
(BJ346331) Dictyostelium discoideum cDNA clone:dda30h17, 3' ...   416   e-112  1
(BJ345645) Dictyostelium discoideum cDNA clone:dda28h09, 3' ...   383   e-102  1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q68EY9) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   200   3e-50
(Q68EQ1) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   198   1e-49
(Q6DBU5) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   197   3e-49
(Q295Y7) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   196   4e-49
(Q9Y5P6) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   192   6e-48
AF135421_1(AF135421|pid:none) Homo sapiens GDP-mannose pyrophosp...   192   6e-48
FJ489652_1(FJ489652|pid:none) Carica papaya GDP-mannose pyrophos...   192   6e-48
(A2VD83) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   192   1e-47
AK129456_1(AK129456|pid:none) Mus musculus premature mRNA for mK...   190   4e-47
(Q8BTZ7) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   190   4e-47
protein update 2009. 6. 1
PSORT 

 psg: 0.89  gvh: 0.38  alm: 0.43  top: 0.20  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLC424 is cyt
5' end seq. ID SLC424F
5' end seq. 
>SLC424F.Seq
GGATATTATAATTTCAAATTAAGTTTTATAAATTTGAAATAATATTGAAAAAAAAAAAAA
ATAAAAAAAATAAAATAAATAAATAAATAAATAAATAAATAAATAAATACGTTGTAAATC
AAATTCTTTAATAATACTAGTAATAATAAATAAAAATAATAATAAATAA----------
Length of 5' end seq. 169
3' end seq. ID SLC424Z
3' end seq. 
>SLC424Z.Seq
----------TTTCCCAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAG
GATTTTGGATGGATGTTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAA
ATTCATTAAAGTCAAAACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAG
TTTTAATTGATCCATCATCTGTCATTGAACCAGGTTGTTTAATTGGCCCAAACGTAACAA
TTGGTCCAAATTGTGTTATTCAAGAAGGTACTCGTTTAGTTAATACAACAGTTTTAGAGG
GTACTACAATTGGTAAAAACTCTTGGATCAAATCTACTATCATTGGTTGGAACTCTTCAA
TTGGTAAATGGGTTAGAATGGAAAATACCTCTGTTCTCGGTGAAGATGTTCATGTTTCTG
ATGAACTTTACATTAATGGTGGTAAAATTTTACCACATAAATCAATTACTTCTTCAATAC
CTGAACCTGAAATTATTATGTAAATCAATCAATCAATAAATCAATAAATCAATCAATCAA
TCAAAAAA
Length of 3' end seq. 538
Connected seq. ID SLC424P
Connected seq. 
>SLC424P.Seq
GGATATTATAATTTCAAATTAAGTTTTATAAATTTGAAATAATATTGAAAAAAAAAAAAA
ATAAAAAAAATAAAATAAATAAATAAATAAATAAATAAATAAATAAATACGTTGTAAATC
AAATTCTTTAATAATACTAGTAATAATAAATAAAAATAATAATAAATAA----------T
TTCCCAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGATG
GATGTTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAAAG
TCAAAACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTGAT
CCATCATCTGTCATTGAACCAGGTTGTTTAATTGGCCCAAACGTAACAATTGGTCCAAAT
TGTGTTATTCAAGAAGGTACTCGTTTAGTTAATACAACAGTTTTAGAGGGTACTACAATT
GGTAAAAACTCTTGGATCAAATCTACTATCATTGGTTGGAACTCTTCAATTGGTAAATGG
GTTAGAATGGAAAATACCTCTGTTCTCGGTGAAGATGTTCATGTTTCTGATGAACTTTAC
ATTAATGGTGGTAAAATTTTACCACATAAATCAATTACTTCTTCAATACCTGAACCTGAA
ATTATTATGTAAATCAATCAATCAATAAATCAATAAATCAATCAATCAATCAAAAAA
Length of connected seq. 707
Full length Seq ID -
Full length Seq. -
Length of full length seq. -