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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC420
Library SL
(Link to library)
Clone ID SLC420
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01169-1|Contig-U15736-1
Original site URL
Representative seq. ID SLC420P
(Link to Original site)
Representative DNA sequence 
>SLC420 (SLC420Q) /CSM/SL/SLC4-A/SLC420Q.Seq.d/
GCTAGCACACACATAAATAATACATACACACATTCACANTATAAAAAAAATATATTACCA
CCACCACCCCCCAATAAGTTTGTATAATTATTCAGAAAAAAAGAAAAAAATATGATATCA
TCTCTAAATAAAAGATTACTAGCAAAATCAAAGTTAATTTTACAACATACCACCAGAGTA
CAACATCANNAACTATTATTAAGAAGTTTTACATCACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAAGAGCAAGAAAAACAACAAGAGXXXXXXXXXXATGGATTGGGTGATTCA
ATAGTACCAGTATTCATTACAATCGATCCATGGAGAGCTACAATCGAACAAGTTAAATCA
TACATAGAAGAGTTTCATCCACAGTTTAAAGGTTTAACAGGTACACCAGAACAAATCACA
AAAGTGGCAAAGAGTTATCGTGTTTTCATGAGCAAATCAGGTAAAGGTGATGACTATTTA
GTTGATCATACTATCATTGTTTATTTAGTTGGTCCAGATGGTAAATTTATTGAATTCTCT
AATGTAAATCAAGACTCTGATATTATCACCAATAAAATTATCACTCGAATTGCAAATGGT
GGTAAAGGTGGTGATAATAGAGGTGAAATTAAATCTGAAAAAAGTTATTTTGAAAAAATT
GCAAACTTTTTTAAATAAAAAAACTAAATAATATATTTCTTTAATA
sequence update 1999. 2.19
Translated Amino Acid sequence 
asthinntythsxykknilpppppnkfv*LFRKKEKNMISSLNKRLLAKSKLILQHTTRV
QHXXLLLRSFTSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQEKQQE---

---GLGDSIVPVFITIDPWRATIEQVKSYIEEFHPQFKGLTGTPEQITKVAKSYRVFMSK
SGKGDDYLVDHTIIVYLVGPDGKFIEFSNVNQDSDIITNKIITRIANGGKGGDNRGEIKS
EKSYFEKIANFFK*kn*iiyffn
Translated Amino Acid sequence (All Frames) 
Frame A:
asthinntythsxykknilpppppnkfv*LFRKKEKNMISSLNKRLLAKSKLILQHTTRV
QHXXLLLRSFTSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQEKQQE---

---mdwviq*yqyslqsihgelqsnklnht*ksfihslkv*qvhqnksqkwqrvivfs*a
nqvkvmti*liilslfi*lvqmvnllnslm*iktlilspiklslelqmvvkvviievkln
lkkvilkklqtflnkktk*yisli

Frame B:
laht*iihthihxikkiyyhhhppislynysekkkki*yhl*ikdy*qnqs*fynippey
nixnyy*evlhhnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnkskknnk---

---wig*fnstsihynrsmesynrts*iihrrvsstv*rfnrytrtnhksgkelscfheq
ir*r**lfs*syyhclfswsrw*iy*il*cksrl*yyhq*nyhsnckww*rw***r*n*i
*kklf*kncklf*ikklnnifl*

Frame C:
*hthk*yihtftx*kkyittttpq*vciiiqkkrkkydiisk*kitskikvnfttyhqst
tsxtiikkfyittttttttttttttttttttttttttttttttrarkttr---

---GLGDSIVPVFITIDPWRATIEQVKSYIEEFHPQFKGLTGTPEQITKVAKSYRVFMSK
SGKGDDYLVDHTIIVYLVGPDGKFIEFSNVNQDSDIITNKIITRIANGGKGGDNRGEIKS
EKSYFEKIANFFK*kn*iiyffn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC420 (SLC420Q) /CSM/SL/SLC4-A/SLC420Q.Seq.d/                        680   0.0
VHQ172 (VHQ172Q) /CSM/VH/VHQ1-C/VHQ172Q.Seq.d/                         42   0.012
CHG747 (CHG747Q) /CSM/CH/CHG7-B/CHG747Q.Seq.d/                         42   0.012
VFM852 (VFM852Q) /CSM/VF/VFM8-C/VFM852Q.Seq.d/                         40   0.049
VSE761 (VSE761Q) /CSM/VS/VSE7-C/VSE761Q.Seq.d/                         38   0.19
VSE754 (VSE754Q) /CSM/VS/VSE7-C/VSE754Q.Seq.d/                         38   0.19
SSM187 (SSM187Q) /CSM/SS/SSM1-D/SSM187Q.Seq.d/                         38   0.19
CFC727 (CFC727Q) /CSM/CF/CFC7-B/CFC727Q.Seq.d/                         38   0.19
SSM737 (SSM737Q) /CSM/SS/SSM7-B/SSM737Q.Seq.d/                         36   0.76
SLK645 (SLK645Q) /CSM/SL/SLK6-B/SLK645Q.Seq.d/                         36   0.76
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034543) Dictyostelium discoideum slug cDNA, clone SLC420.      678   0.0    2
(AU060967) Dictyostelium discoideum slug cDNA, clone SLC420.      196   4e-84  3
(AC096010) Rattus norvegicus clone CH230-12F19, *** SEQUENCI...    46   0.092  2
(BX842669) Zebrafish DNA sequence from clone DKEY-222O17 in ...    48   0.48   1
(AC123253) Rattus norvegicus 12 BAC CH230-230N7 (Children's ...    48   0.48   1
(AC135766) Rattus norvegicus clone CH230-209P4, WORKING DRAF...    48   0.48   1
(AC119628) Rattus norvegicus clone CH230-264F23, WORKING DRA...    48   0.48   1
(AC118428) Rattus norvegicus clone CH230-303D10, *** SEQUENC...    48   0.48   1
(AC114172) Rattus norvegicus clone CH230-182P18, *** SEQUENC...    48   0.48   1
(AC096268) Rattus norvegicus clone CH230-82E9, WORKING DRAFT...    48   0.48   1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT033172_1(BT033172|pid:none) Zea mays full-length cDNA clone ZM...   109   1e-22
EU964969_1(EU964969|pid:none) Zea mays clone 282853 unknown mRNA.     109   1e-22
AY070393_1(AY070393|pid:none) Arabidopsis thaliana putative SCO1...   108   1e-22
AP008208_386(AP008208|pid:none) Oryza sativa (japonica cultivar-...   107   3e-22
EF148138_1(EF148138|pid:none) Populus trichocarpa clone WS0127_O...   103   8e-21
CP001576_125(CP001576|pid:none) Micromonas sp. RCC299 chromosome...   101   2e-20
AE014134_860(AE014134|pid:none) Drosophila melanogaster chromoso...   101   3e-20
AK139512_1(AK139512|pid:none) Mus musculus 2 cells egg cDNA, RIK...    97   5e-19
BC157457_1(BC157457|pid:none) Xenopus laevis hypothetical protei...    97   5e-19
(Q5SUC9) RecName: Full=Protein SCO1 homolog, mitochondrial; Flag...    97   5e-19
protein update 2009. 6. 1
PSORT 

 psg: 0.67  gvh: 0.59  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLC420 is mit
5' end seq. ID SLC420F
5' end seq. 
>SLC420F.Seq
GCTAGCACACACATAAATAATACATACACACATTCACANTATAAAAAAAATATATTACCA
CCACCACCCCCCAATAAGTTTGTATAATTATTCAGAAAAAAAGAAAAAAATATGATATCA
TCTCTAAATAAAAGATTACTAGCAAAATCAAAGTTAATTTTACAACATACCACCAGAGTA
CAACATCANNAACTATTATTAAGAAGTTTTACATCACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAAGAGCAAGAAAAACAACAAGAG----------
Length of 5' end seq. 333
3' end seq. ID SLC420Z
3' end seq. 
>SLC420Z.Seq
----------ATGGATTGGGTGATTCAATAGTACCAGTATTCATTACAATCGATCCATGG
AGAGCTACAATCGAACAAGTTAAATCATACATAGAAGAGTTTCATCCACAGTTTAAAGGT
TTAACAGGTACACCAGAACAAATCACAAAAGTGGCAAAGAGTTATCGTGTTTTCATGAGC
AAATCAGGTAAAGGTGATGACTATTTAGTTGATCATACTATCATTGTTTATTTAGTTGGT
CCAGATGGTAAATTTATTGAATTCTCTAATGTAAATCAAGACTCTGATATTATCACCAAT
AAAATTATCACTCGAATTGCAAATGGTGGTAAAGGTGGTGATAATAGAGGTGAAATTAAA
TCTGAAAAAAGTTATTTTGAAAAAATTGCAAACTTTTTTAAATAAAAAAACTAAATAATA
TATTTCTTTAATA
Length of 3' end seq. 423
Connected seq. ID SLC420P
Connected seq. 
>SLC420P.Seq
GCTAGCACACACATAAATAATACATACACACATTCACANTATAAAAAAAATATATTACCA
CCACCACCCCCCAATAAGTTTGTATAATTATTCAGAAAAAAAGAAAAAAATATGATATCA
TCTCTAAATAAAAGATTACTAGCAAAATCAAAGTTAATTTTACAACATACCACCAGAGTA
CAACATCANNAACTATTATTAAGAAGTTTTACATCACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAAGAGCAAGAAAAACAACAAGAG----------ATGGATTGGGTGATTCA
ATAGTACCAGTATTCATTACAATCGATCCATGGAGAGCTACAATCGAACAAGTTAAATCA
TACATAGAAGAGTTTCATCCACAGTTTAAAGGTTTAACAGGTACACCAGAACAAATCACA
AAAGTGGCAAAGAGTTATCGTGTTTTCATGAGCAAATCAGGTAAAGGTGATGACTATTTA
GTTGATCATACTATCATTGTTTATTTAGTTGGTCCAGATGGTAAATTTATTGAATTCTCT
AATGTAAATCAAGACTCTGATATTATCACCAATAAAATTATCACTCGAATTGCAAATGGT
GGTAAAGGTGGTGATAATAGAGGTGAAATTAAATCTGAAAAAAGTTATTTTGAAAAAATT
GCAAACTTTTTTAAATAAAAAAACTAAATAATATATTTCTTTAATA
Length of connected seq. 756
Full length Seq ID -
Full length Seq. -
Length of full length seq. -