SLC419
Library SL
(Link to library)
Clone ID SLC419
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03801-1
Original site URL
Representative seq. ID SLC419Z
(Link to Original site)
Representative DNA sequence
>SLC419 (SLC419Q) /CSM/SL/SLC4-A/SLC419Q.Seq.d/
XXXXXXXXXXCATTTAAAAACATTTGAGCCAATGAACCTGTTAAACAATAATTTACATCT
TGATCATATGCTGATGGAGTTTTTGAACTACAATCACTTGGTGATTTAATACCATATGAA
ATTGTTACTCTTTTACTTGATTGTGGTACAACATAAATTCCTTTTGCACATTGTGATGAT
GATTGAATTGAAATTGGTGTATTTTTACAATCTTTATTATCATACATTGCTTGAATATAT
TCTAATCCATTTACAACATTTTTAAAAATACAATAATTTATTACTGTAAATAATAATATA
ATTTTTAAAATTTTCATTTTAATATGGGGTTCTATTTTATAATAT
sequence update 1998. 5. 2
Translated Amino Acid sequence
---lktfepmnllnnnlhldhmlmeflnynhlvi*YHMKLLLFYLIVVQHKFLLHIVMMI
ELKLVYFYNLYYHTLLEYILIHLQHF*kynnlll*iii*flkfsf*ygvlfyn


Translated Amino Acid sequence (All Frames)
Frame A:
---i*khlsq*tc*tiiyiliic*wsf*ttitw*fnti*ncysft*lwyninsfctl***
ln*nwciftifiiihclnif*siynifkntiiyyck**ynf*nfhfnmgfyfii


Frame B:
---fkni*anepvkq*fts*syadgvfelqslgdlipyeivtllldcgtt*ipfahcddd
*ieigvflqsllsyia*iysnpfttflkiq*fitvnnniifkifiliwgsil*y


Frame C:
---lktfepmnllnnnlhldhmlmeflnynhlvi*YHMKLLLFYLIVVQHKFLLHIVMMI
ELKLVYFYNLYYHTLLEYILIHLQHF*kynnlll*iii*flkfsf*ygvlfyn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD728 (VFD728Q) /CSM/VF/VFD7-B/VFD728Q.Seq.d/ 490 e-138
SSI602 (SSI602Q) /CSM/SS/SSI6-A/SSI602Q.Seq.d/ 490 e-138
SSD173 (SSD173Q) /CSM/SS/SSD1-D/SSD173Q.Seq.d/ 490 e-138
SLC419 (SLC419Q) /CSM/SL/SLC4-A/SLC419Q.Seq.d/ 490 e-138
SSL642 (SSL642Q) /CSM/SS/SSL6-B/SSL642Q.Seq.d/ 109 3e-23
SSA380 (SSA380Q) /CSM/SS/SSA3-D/SSA380Q.Seq.d/ 44 0.001
VHP595 (VHP595Q) /CSM/VH/VHP5-D/VHP595Q.Seq.d/ 34 1.3
VHH591 (VHH591Q) /CSM/VH/VHH5-D/VHH591Q.Seq.d/ 34 1.3
VSI755 (VSI755Q) /CSM/VS/VSI7-C/VSI755Q.Seq.d/ 32 5.2
VSG312 (VSG312Q) /CSM/VS/VSG3-A/VSG312Q.Seq.d/ 32 5.2

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 460 e-125 1
(AU034542) Dictyostelium discoideum slug cDNA, clone SLC419. 460 e-125 1
(BJ412407) Dictyostelium discoideum cDNA clone:ddv8h07, 5' e... 460 e-125 1
(AU073870) Dictyostelium discoideum slug cDNA, clone SSI602. 315 6e-82 1
(AU072007) Dictyostelium discoideum slug cDNA, clone SSD173. 291 8e-75 1
(BJ430688) Dictyostelium discoideum cDNA clone:ddv8h07, 3' e... 242 7e-60 1
(C93719) Dictyostelium discoideum slug cDNA, clone SSL642. 68 2e-07 1
(EJ456060) 1093017475205 Global-Ocean-Sampling_GS-28-01-01-1... 52 0.013 1
(CU929964) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.83 1
(CZ941145) 323165 Tomato EcoRI BAC Library Solanum lycopersi... 46 0.83 1
dna update 2009. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_51(AC116984|pid:none) Dictyostelium discoideum chromoso... 193 2e-48
AL929357_53(AL929357|pid:none) Plasmodium falciparum strain 3D7,... 37 0.21
CP001519_16(CP001519|pid:none) Borrelia sp. SV1 plasmid SV1_lp17... 35 0.78
(Q9P6M8) RecName: Full=mRNA export factor crp79; AltName: Full=P... 33 2.3
AF432874_1(AF432874|pid:none) Schizosaccharomyces pombe Crp79 ge... 33 2.3
CP000395_477(CP000395|pid:none) Borrelia afzelii PKo, complete g... 33 3.9
AE008384_83(AE008384|pid:none) Methanosarcina mazei strain Goe1,... 32 6.6
(Q7VR50) RecName: Full=Fumarate hydratase class II; Sho... 32 6.6
CP000236_839(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan... 32 8.7
EF103440_1(EF103440|pid:none) Haliotis discus discus alcohol deh... 32 8.7
protein update 2009. 6. 1
PSORT

psg: 0.96 gvh: 0.43 alm: 0.32 top: 0.50 tms: 0.07 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.83 leu: 0.83 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
20.0 %: endoplasmic reticulum
16.0 %: mitochondrial
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLC419 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC419Z
3' end seq.
>SLC419Z.Seq
----------CATTTAAAAACATTTGAGCCAATGAACCTGTTAAACAATAATTTACATCT
TGATCATATGCTGATGGAGTTTTTGAACTACAATCACTTGGTGATTTAATACCATATGAA
ATTGTTACTCTTTTACTTGATTGTGGTACAACATAAATTCCTTTTGCACATTGTGATGAT
GATTGAATTGAAATTGGTGTATTTTTACAATCTTTATTATCATACATTGCTTGAATATAT
TCTAATCCATTTACAACATTTTTAAAAATACAATAATTTATTACTGTAAATAATAATATA
ATTTTTAAAATTTTCATTTTAATATGGGGTTCTATTTTATAATAT
Length of 3' end seq. 335
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -