SLC418
Library SL
(Link to library)
Clone ID SLC418
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15820-1
Original site URL
Representative seq. ID SLC418E
(Link to Original site)
Representative DNA sequence
>SLC418 (SLC418Q) /CSM/SL/SLC4-A/SLC418Q.Seq.d/
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCTATGTCTTTG
TGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTATTGCACCATT
TGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTCTGGAGGTGC
TTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTCTCATCATTG
GGTTTATTGGCTCGGTCCTATAGTTGGGGCCATCTTGGCTGCTTTCATCTATCGTTGCTT
ATTACAAGAACGTTTTGATGTTATAGAAAGACCTGGATATATTGCACCATTAACCGACCC
ATCAACTGCAGTTTCTTCTTATTAAAATAATAATGAAATAACACTATATGACCTTAATCA
TTATTTAAATAAAAACATAATTAAACTATATAAATTAGAACCTATTGACCAAAAAA
sequence update 1999. 7.28
Translated Amino Acid sequence
kik*iiiksliif*ittq*k*i*f*rkkkkkkq*nkiin*k*KIKNKKMVKVVPLRFITY
DPLKDPSKMIYRRPISKPVKAFKGFFSEFLGALYLVYFCGGSVCAAFAVAGDSAARALLG
GLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGIL
YGCLPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPF
AIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIYRCL
LQERFDVIERPGYIAPLTDPSTAVSSY*nnneitlydlnhylnkniiklyklepidqk


Translated Amino Acid sequence (All Frames)
Frame A:
qnkinyn*kfnnflnhytieinlilkkkkkkktik*nn*lkiknkk*kngksstt*iynl
*sfkgsk*ndl*ttnfktsksi*rflfrifrsiifglflwwvsmcsfcscr**cssciir
rtnsrygigcinlgsiwcfrl*fksscnfskfiiw*srfn**silccspnswlycrcwyl
iwlpskyv*n*lgcstfstwyeywssfphgddvn*ysmslcirylcfqclgsss*sycti
cnwfsfiywssnrf*flwrcfkss*sfrpinhkwsmvsslgllarsyswghlgcfhlsll
itrtf*cyrktwiyctinrpincsffllk***nnti*p*slfk*khn*ti*irty*pk


Frame B:
kik*iiiksliif*ittq*k*i*f*rkkkkkkq*nkiin*k*KIKNKKMVKVVPLRFITY
DPLKDPSKMIYRRPISKPVKAFKGFFSEFLGALYLVYFCGGSVCAAFAVAGDSAARALLG
GLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGIL
YGCLPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPF
AIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIYRCL
LQERFDVIERPGYIAPLTDPSTAVSSY*nnneitlydlnhylnkniiklyklepidqk


Frame C:
k*nkl*lkv**ffkslhnrnkfnfkekkkkknnkik*liknkk*kikkw*k*yhldl*pm
il*riqvk*fiddqfqnq*khlkvsfqnf*ehyiwfisvvgqyvqllqlqvivqlvhy*e
d*fkvwhwlh*fgqylvfqvvi*iql*l*qiyylvesv*livyimlqpkflvvlpvlvsy
mvafqicieltwvfhi*hlv*ilvklsswr*c*lvfyvfvy*vplfsmfgivvlivlhhl
qlv*lylle*q*vlislevl*iqlef*ahqs*veygliigfigsvl*lgpswllssivay
yknvlml*kdldilhh*pthqlqfllikiimk*hymtliii*ikt*lnyin*nlltkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC418 (SLC418Q) /CSM/SL/SLC4-A/SLC418Q.Seq.d/ 1844 0.0
SSD468 (SSD468Q) /CSM/SS/SSD4-C/SSD468Q.Seq.d/ 1522 0.0
SSJ351 (SSJ351Q) /CSM/SS/SSJ3-C/SSJ351Q.Seq.d/ 1298 0.0
SSD296 (SSD296Q) /CSM/SS/SSD2-D/SSD296Q.Seq.d/ 1263 0.0
SLC875 (SLC875Q) /CSM/SL/SLC8-D/SLC875Q.Seq.d/ 1247 0.0
SSC789 (SSC789Q) /CSM/SS/SSC7-D/SSC789Q.Seq.d/ 1237 0.0
SSH854 (SSH854Q) /CSM/SS/SSH8-C/SSH854Q.Seq.d/ 1213 0.0
CFG359 (CFG359Q) /CSM/CF/CFG3-C/CFG359Q.Seq.d/ 1197 0.0
CHB271 (CHB271Q) /CSM/CH/CHB2-C/CHB271Q.Seq.d/ 1187 0.0
CFG195 (CFG195Q) /CSM/CF/CFG1-D/CFG195Q.Seq.d/ 1152 0.0

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AB008431) Dictyostelium discoideum aqpA mRNA for aquaporin,... 1792 0.0 1
(AB032841) Dictyostelium discoideum aqpA gene for aquaporin,... 1310 0.0 1
(C92254) Dictyostelium discoideum slug cDNA, clone SSD296. 1263 0.0 1
(AU034437) Dictyostelium discoideum slug cDNA, clone SLC875. 1247 0.0 1
(AU038547) Dictyostelium discoideum slug cDNA, clone SSH854. 1213 0.0 1
(BJ372654) Dictyostelium discoideum cDNA clone:ddc13f15, 3' ... 1197 0.0 1
(BJ377466) Dictyostelium discoideum cDNA clone:ddc24m18, 3' ... 1187 0.0 1
(BJ372740) Dictyostelium discoideum cDNA clone:ddc13m23, 3' ... 1152 0.0 1
(BJ378136) Dictyostelium discoideum cDNA clone:ddc27m12, 3' ... 1126 0.0 1
(C89716) Dictyostelium discoideum slug cDNA, clone SSG234. 1112 0.0 1
dna update 2009. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9WTY4) RecName: Full=Aquaporin-5; Short=AQP-5; &AF08... 149 2e-34
(Q06019) RecName: Full=Lens fiber major intrinsic protein; AltNa... 149 2e-34
AY890983_1(AY890983|pid:none) Synthetic construct Homo sapiens c... 149 2e-34
AY894080_1(AY894080|pid:none) Synthetic construct Homo sapiens c... 149 2e-34
(Q9V5Z7) RecName: Full=Aquaporin; &AE013599_1356(AE013599|pid:n... 146 1e-33
(P47864) RecName: Full=Aquaporin-5; Short=AQP-5; &A556... 145 2e-33
(A8W649) RecName: Full=Aquaporin-5; Short=AQP-5; &EU19... 145 2e-33
AB433197_1(AB433197|pid:none) Coptotermes formosanus CfAQP1 mRNA... 144 4e-33
(Q25074) RecName: Full=Aquaporin; AltName: Full=Water channel 1;... 144 4e-33
AB292479_1(AB292479|pid:none) Amoeba proteus AQP gene for aquapo... 144 4e-33
protein update 2009. 7. 4
PSORT

psg: 0.79 gvh: 0.62 alm: 0.24 top: 0.40 tms: 0.40 mit: 0.34 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: plasma membrane
28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: nuclear

>> prediction for SLC418 is pla

5' end seq. ID SLC418F
5' end seq.
>SLC418F.Seq
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATG----------
Length of 5' end seq. 604
3' end seq. ID SLC418Z
3' end seq.
>SLC418Z.Seq
----------TGCCGGTGCTGGTATCTTATATGGTTGCCTTCCAAATATGTATAGAATTG
ACTTGGGTGTTCCACATTTAGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATGGAGA
TGATGTTAACTAGTATTCTATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTTTGGG
ATCGTCGTCTTAATCGTATTGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGAGTAG
CAATAGGTTTTAATTTCTCTGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCATCAA
TCATAAGTGGAGTATGGTCTCATCATTGGGTTTATTGGCTCGGTCCTATAGTTGGGGCCA
TCTTGGCTGCTTTCATCTATCGTTGCTTATTACAAGAACGTTTTGATGTTATAGAAAGAC
CTGGATATATTGCACCATTAACCGACCCATCAACTGCAGTTTCTTCTTATTAAAATAATA
ATGAAATAACACTATATGACCTTAATCATTATTTAAATAAAAACATAATTAAACTATATA
AATTAGAACCTATTGACCAAAAAA
Length of 3' end seq. 554
Connected seq. ID SLC418P
Connected seq.
>SLC418P.Seq
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATG----------TGCCGGTGCTGGTATCTTATATGGTTGCCTTCCAAATATGTATAGA
ATTGACTTGGGTGTTCCACATTTAGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATG
GAGATGATGTTAACTAGTATTCTATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTT
TGGGATCGTCGTCTTAATCGTATTGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGA
GTAGCAATAGGTTTTAATTTCTCTGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCA
TCAATCATAAGTGGAGTATGGTCTCATCATTGGGTTTATTGGCTCGGTCCTATAGTTGGG
GCCATCTTGGCTGCTTTCATCTATCGTTGCTTATTACAAGAACGTTTTGATGTTATAGAA
AGACCTGGATATATTGCACCATTAACCGACCCATCAACTGCAGTTTCTTCTTATTAAAAT
AATAATGAAATAACACTATATGACCTTAATCATTATTTAAATAAAAACATAATTAAACTA
TATAAATTAGAACCTATTGACCAAAAAA
Length of connected seq. 1158
Full length Seq ID SLC418E
Full length Seq.
>SLC418E.Seq
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCTATGTCTTTG
TGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTATTGCACCATT
TGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTCTGGAGGTGC
TTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTCTCATCATTG
GGTTTATTGGCTCGGTCCTATAGTTGGGGCCATCTTGGCTGCTTTCATCTATCGTTGCTT
ATTACAAGAACGTTTTGATGTTATAGAAAGACCTGGATATATTGCACCATTAACCGACCC
ATCAACTGCAGTTTCTTCTTATTAAAATAATAATGAAATAACACTATATGACCTTAATCA
TTATTTAAATAAAAACATAATTAAACTATATAAATTAGAACCTATTGACCAAAAAA
Length of full length seq. 1076