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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC415
Library SL
(Link to library)
Clone ID SLC415
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16521-1
Original site URL
Representative seq. ID SLC415E
(Link to Original site)
Representative DNA sequence 
>SLC415 (SLC415Q) /CSM/SL/SLC4-A/SLC415Q.Seq.d/
CCAACGTTTAGTTACCCCAACCACCGTTGCCCGTAGAAAGGCTCTCCGTGCTAAAAAAGC
TGCTCGTCACACTAAAGCCAGCAATGAAGCCGCCGAATACGCTAAACTCGTTGCCCAAAG
ACAACAAGCTAAAGCCAAGAGATCCGTCAAAGTTTCAAGCAAAAAAGTTGTTGCCAAGTA
AATAAATAATACTTTTTTCCCTATAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
QRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKKVVAK*
inntffpik
Translated Amino Acid sequence (All Frames) 
Frame A:
ptfsypnhrcp*kgspc*kscssh*sqq*srrir*trcpktts*sqeirqsfkqksccqv
nk*yffpykk


Frame B:
QRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKKVVAK*
inntffpik


Frame C:
nv*lpqpplpverlsvlkkllvtlkpamkppntlnslpkdnklkprdpskfqakkllpsk
*iilfsl*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC415 (SLC415Q) /CSM/SL/SLC4-A/SLC415Q.Seq.d/                        416   e-116
FC-AR19 (FC-AR19Q) /CSM/FC/FC-AR/FC-AR19Q.Seq.d/                      416   e-116
FC-036 (FC-036Q) /CSM/CG/CG-FC/FC-036Q.Seq.d/                         416   e-116
VSC395 (VSC395Q) /CSM/VS/VSC3-D/VSC395Q.Seq.d/                        412   e-115
VSA462 (VSA462Q) /CSM/VS/VSA4-C/VSA462Q.Seq.d/                        412   e-115
VSD861 (VSD861Q) /CSM/VS/VSD8-C/VSD861Q.Seq.d/                        410   e-114
SLA276 (SLA276Q) /CSM/SL/SLA2-D/SLA276Q.Seq.d/                        406   e-113
FC-AY04 (FC-AY04Q) /CSM/FC/FC-AY/FC-AY04Q.Seq.d/                      406   e-113
FC-AJ17 (FC-AJ17Q) /CSM/FC/FC-AJ/FC-AJ17Q.Seq.d/                      406   e-113
VSC551 (VSC551Q) /CSM/VS/VSC5-C/VSC551Q.Seq.d/                        404   e-112
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284395) Dictyostelium discoideum gamete cDNA clone:FC-AR1...   416   e-112  1
(AU034540) Dictyostelium discoideum slug cDNA, clone SLC415.      416   e-112  1
(AU262536) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-111  1
(AU261493) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-111  1
(AU264670) Dictyostelium discoideum vegetative cDNA clone:VS...   410   e-111  1
(AU284472) Dictyostelium discoideum gamete cDNA clone:FC-AY0...   406   e-109  1
(AU284302) Dictyostelium discoideum gamete cDNA clone:FC-AJ1...   406   e-109  1
(AU052225) Dictyostelium discoideum slug cDNA, clone SLA276.      406   e-109  1
(AU284364) Dictyostelium discoideum gamete cDNA clone:FC-AP0...   404   e-109  1
(AU262639) Dictyostelium discoideum vegetative cDNA clone:VS...   404   e-109  1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UU3) RecName: Full=40S ribosomal protein S6;                       44   0.001
protein update 2009. 3. 4
PSORT 

 psg: 0.29  gvh: 0.31  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.57  mip: 0.05
 nuc: 0.24  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLC415 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC415E
Full length Seq. 
>SLC415E.Seq
CCAACGTTTAGTTACCCCAACCACCGTTGCCCGTAGAAAGGCTCTCCGTGCTAAAAAAGC
TGCTCGTCACACTAAAGCCAGCAATGAAGCCGCCGAATACGCTAAACTCGTTGCCCAAAG
ACAACAAGCTAAAGCCAAGAGATCCGTCAAAGTTTCAAGCAAAAAAGTTGTTGCCAAGTA
AATAAATAATACTTTTTTCCCTATAAAAAA
Length of full length seq. 210