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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC409
Library SL
(Link to library)
Clone ID SLC409
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14931-1
Original site URL
Representative seq. ID SLC409Z
(Link to Original site)
Representative DNA sequence 
>SLC409 (SLC409Q) /CSM/SL/SLC4-A/SLC409Q.Seq.d/
XXXXXXXXXXAAATAATGTAAAATTACATTTCCCAGTCGATTATGTCATTGCCGATAAAT
TTGATAATGATGCCAACATCAAAACCGTCACTCAAGATCAAGGTATCCCAGAAGGTTGGA
TGGGTTTAGATTGTGGTCCAGAGACTATCAAAGAAAACAGAGATACCATCTCAAGAGCAA
AAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCGGTA
CAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCATTG
GTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTTAGTCATG
TCTCAACTGGTGGTGGTGCTTCATTAGAATTATTAGAAGGTAAAGAATTACCAGGTGTTA
CTGCTTTATCTGATTTATGAATTTTAAAAAATAAATTATAAAAAAATAATAATAATAATA
ATAATAATAATAC
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---NNVKLHFPVDYVIADKFDNDANIKTVTQDQGIPEGWMGLDCGPETIKENRDTISRAK
TIVWNGPMGVFEKSNFEAGTKAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHV
STGGGASLELLEGKELPGVTALSDL*ilknkl*knnnnnnnnn
Translated Amino Acid sequence (All Frames) 
Frame A:
---NNVKLHFPVDYVIADKFDNDANIKTVTQDQGIPEGWMGLDCGPETIKENRDTISRAK
TIVWNGPMGVFEKSNFEAGTKAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHV
STGGGASLELLEGKELPGVTALSDL*ilknkl*knnnnnnnnn


Frame B:
---im*nyisqsimslpinlimmptskpslkikvsqkvgwv*ivvqrlskkteipsqeqk
psfgmvlwvylkraiskpvqklpwmmlsmpqpmvlslslvvvipplvlpnttlkiklvms
qlvvvlh*ny*kvknyqvlllyliyef*kinykkiiiiiiiii


Frame C:
---*ckitfpsrlchcr*i***cqhqnrhsrsryprrldgfrlwsrdyqrkqryhlkskn
hrlewsygci*keqfrsrykschg*ccqchnqwcyhyhwww*yrhlccqiqh*r*s*scl
nwwwcfiriirr*ritrcycfi*fmnfkk*iikk********y
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI369 (VFI369Q) /CSM/VF/VFI3-C/VFI369Q.Seq.d/                        858   0.0
SSG527 (SSG527Q) /CSM/SS/SSG5-B/SSG527Q.Seq.d/                        858   0.0
SLH501 (SLH501Q) /CSM/SL/SLH5-A/SLH501Q.Seq.d/                        858   0.0
SLF191 (SLF191Q) /CSM/SL/SLF1-D/SLF191Q.Seq.d/                        858   0.0
SLC409 (SLC409Q) /CSM/SL/SLC4-A/SLC409Q.Seq.d/                        858   0.0
SLB639 (SLB639Q) /CSM/SL/SLB6-B/SLB639Q.Seq.d/                        858   0.0
FC-BR24 (FC-BR24Q) /CSM/FC/FC-BR/FC-BR24Q.Seq.d/                      850   0.0
VFH746 (VFH746Q) /CSM/VF/VFH7-B/VFH746Q.Seq.d/                        848   0.0
AFE535 (AFE535Q) /CSM/AF/AFE5-B/AFE535Q.Seq.d/                        846   0.0
AFL505 (AFL505Q) /CSM/AF/AFL5-A/AFL505Q.Seq.d/                        844   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF316577) Dictyostelium discoideum phosphoglycerate kinase ...   860   0.0    1
(AF018637) Dictyostelium discoideum phosphoglycerate kinase ...   860   0.0    1
(AU052839) Dictyostelium discoideum slug cDNA, clone SLF191.      860   0.0    1
(AU039299) Dictyostelium discoideum slug cDNA, clone SLH501.      860   0.0    1
(AU034537) Dictyostelium discoideum slug cDNA, clone SLC409.      860   0.0    1
(AU033942) Dictyostelium discoideum slug cDNA, clone SLB639.      860   0.0    1
(C90092) Dictyostelium discoideum slug cDNA, clone SSG527.        860   0.0    1
(BJ432099) Dictyostelium discoideum cDNA clone:ddv17j17, 3' ...   860   0.0    1
(AU284975) Dictyostelium discoideum gamete cDNA clone:FC-BR2...   852   0.0    1
(BJ434280) Dictyostelium discoideum cDNA clone:ddv16l11, 3' ...   848   0.0    1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPM4) RecName: Full=Phosphoglycerate kinase;          EC=2.7....   244   8e-64
AF018637_1(AF018637|pid:none) Dictyostelium discoideum phosphogl...   244   8e-64
AY309061_1(AY309061|pid:none) Schistosoma japonicum phosphoglyce...   175   4e-43
FN315990_1(FN315990|pid:none) Schistosoma japonicum isolate Anhu...   175   4e-43
EZ000104_1(EZ000104|pid:none) TSA: Schistosoma japonicum SJCHGC0...   175   4e-43
AY223444_1(AY223444|pid:none) Schistosoma japonicum clone ZZZ452...   175   4e-43
FN322120_1(FN322120|pid:none) Schistosoma japonicum isolate Anhu...   175   4e-43
FN315993_1(FN315993|pid:none) Schistosoma japonicum isolate Anhu...   173   2e-42
(P41759) RecName: Full=Phosphoglycerate kinase;          EC=2.7....   167   1e-40
BC083568_1(BC083568|pid:none) Rattus norvegicus phosphoglycerate...   167   2e-40
protein update 2009. 6. 1
PSORT 

 psg: 0.58  gvh: 0.33  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLC409 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC409Z
3' end seq. 
>SLC409Z.Seq
----------AAATAATGTAAAATTACATTTCCCAGTCGATTATGTCATTGCCGATAAAT
TTGATAATGATGCCAACATCAAAACCGTCACTCAAGATCAAGGTATCCCAGAAGGTTGGA
TGGGTTTAGATTGTGGTCCAGAGACTATCAAAGAAAACAGAGATACCATCTCAAGAGCAA
AAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCGGTA
CAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCATTG
GTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTTAGTCATG
TCTCAACTGGTGGTGGTGCTTCATTAGAATTATTAGAAGGTAAAGAATTACCAGGTGTTA
CTGCTTTATCTGATTTATGAATTTTAAAAAATAAATTATAAAAAAATAATAATAATAATA
ATAATAATAATAC
Length of 3' end seq. 483
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -