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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC405
Library SL
(Link to library)
Clone ID SLC405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11279-1|Contig-U16243-1
Original site URL
Representative seq. ID SLC405P
(Link to Original site)
Representative DNA sequence 
>SLC405 (SLC405Q) /CSM/SL/SLC4-A/SLC405Q.Seq.d/
ATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGCCACTTAAGCACT
GGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTA
ATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACA
GCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGAT
CCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCA
ACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACA
GTCAACAGACAATGTTCATCAGGTTTACAANCAANNGCCAATTGTGCAGCAGCAGTCAAA
GCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATG
GCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTGXXXX
XXXXXXGTATAAATCTAATCAAACCGGTATCCTTAGGGCTCATCAAATGGGTTCTTGTAG
AATGGGTTCAAGTAAATCAAATTCTGTCGTCAATGAAAATGGTGAATCTTGGGATGTTAA
AAGATTATTCATTGCCGATGGTTCTGTATTACCAAGTTCAGTTGGTGTTAACCCAATGAT
TACAATTTATGCAATCTCTCATATAATTGCAAATCAAATCATTCAATTATATCCACTTCC
AAATACTAATAATTTAAATAGTAATAATACTACTACTACTACAAATATTGGTAGTTCAAC
AACAATAACCGCAAATTTAAATAATGATTCTCCAACTCAAATTGCTTACGAAAGAGATAA
TTAAAAAAAAAAAAAAAAAAAAAATTTAATTAACTATAAAATTTTTTTTGTCACTTGTAT
TAATTTAATCTAAAAAAAAAAAAAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
ITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKET
APDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCYT
VNRQCSSGLQXXANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIISG--
-

---YKSNQTGILRAHQMGSCRMGSSKSNSVVNENGESWDVKRLFIADGSVLPSSVGVNPM
ITIYAISHIIANQIIQLYPLPNTNNLNSNNTTTTTNIGSSTTITANLNNDSPTQIAYERD
N*kkkkkknlinykiffvtcinli*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKET
APDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCYT
VNRQCSSGLQXXANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIISG--
-

---v*i*snryp*gssngfl*ngfk*ikfcrq*kw*ilgc*kiihcrwfcitkfswc*pn
dynlcnlsyncksnhsiistsky**fk***yyyyykyw*fnnnnrkfk**fsnsnclrkr
*lkkkkkkkfn*l*nffchly*fnlkkkk

Frame B:
*likchsiqelklflat*aldqf*nqiqlldqlnqemil*llhhfvqqfvklkeehskrq
hqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqrkyhviq
stdnvhqvyxqxpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriqslvv--
-

---YKSNQTGILRAHQMGSCRMGSSKSNSVVNENGESWDVKRLFIADGSVLPSSVGVNPM
ITIYAISHIIANQIIQLYPLPNTNNLNSNNTTTTTNIGSSTTITANLNNDSPTQIAYERD
N*kkkkkknlinykiffvtcinli*kkkk

Frame C:
n**nviqfkn*nyfsplkhwtnfriksnfwis*irr*ycncctisysnl*s*krsiqrds
tr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftkgstmlys
qqtmfirftxxxqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgsnh*wl--
-

---inlikpvslglikwvlvewvqvnqilssmkmvnlgmlkdyslpmvlyyqvqlvltq*
lqfmqsli*lqiksfnyihfqilii*iviillllqilvvqqq*pqi*imilqlklltkei
ikkkkkkki*ltikfflslvli*skkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC405 (SLC405Q) /CSM/SL/SLC4-A/SLC405Q.Seq.d/                       1711   0.0
VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/                       1037   0.0
VFN840 (VFN840Q) /CSM/VF/VFN8-B/VFN840Q.Seq.d/                       1037   0.0
VFN260 (VFN260Q) /CSM/VF/VFN2-C/VFN260Q.Seq.d/                       1037   0.0
VFL724 (VFL724Q) /CSM/VF/VFL7-A/VFL724Q.Seq.d/                       1037   0.0
VFK696 (VFK696Q) /CSM/VF/VFK6-D/VFK696Q.Seq.d/                       1037   0.0
VFK412 (VFK412Q) /CSM/VF/VFK4-A/VFK412Q.Seq.d/                       1037   0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/                       1037   0.0
SLA217 (SLA217Q) /CSM/SL/SLA2-A/SLA217Q.Seq.d/                       1037   0.0
SFJ695 (SFJ695Q) /CSM/SF/SFJ6-D/SFJ695Q.Seq.d/                       1037   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060964) Dictyostelium discoideum slug cDNA, clone SLC405.     1043   0.0    1
(AU060090) Dictyostelium discoideum slug cDNA, clone SLA217.     1035   0.0    1
(BJ420517) Dictyostelium discoideum cDNA clone:ddv39f14, 5' ...  1035   0.0    1
(BJ417694) Dictyostelium discoideum cDNA clone:ddv28p10, 5' ...  1035   0.0    1
(BJ416866) Dictyostelium discoideum cDNA clone:ddv27g16, 5' ...  1035   0.0    1
(BJ415932) Dictyostelium discoideum cDNA clone:ddv24p05, 5' ...  1035   0.0    1
(BJ415557) Dictyostelium discoideum cDNA clone:ddv22o24, 5' ...  1035   0.0    1
(BJ414992) Dictyostelium discoideum cDNA clone:ddv21h04, 5' ...  1035   0.0    1
(BJ412450) Dictyostelium discoideum cDNA clone:ddv8b18, 5' e...  1035   0.0    1
(BJ391274) Dictyostelium discoideum cDNA clone:dds15m21, 5' ...  1035   0.0    1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   320   3e-86
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   160   6e-38
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   160   6e-38
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   159   1e-37
BT051821_1(BT051821|pid:none) Medicago truncatula clone MTYF5_F6...   159   2e-37
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   158   3e-37
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.       156   9e-37
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   154   3e-36
AY308827_1(AY308827|pid:none) Helianthus annuus acetoacetyl CoA ...   153   1e-35
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   152   2e-35
protein update 2009. 6. 1
PSORT 

 psg: 0.62  gvh: 0.40  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SLC405 is nuc
5' end seq. ID SLC405F
5' end seq. 
>SLC405F.Seq
ATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGCCACTTAAGCACT
GGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTA
ATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACA
GCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGAT
CCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCA
ACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACA
GTCAACAGACAATGTTCATCAGGTTTACAANCAANNGCCAATTGTGCAGCAGCAGTCAAA
GCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATG
GCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTG----
------
Length of 5' end seq. 536
3' end seq. ID SLC405Z
3' end seq. 
>SLC405Z.Seq
----------GTATAAATCTAATCAAACCGGTATCCTTAGGGCTCATCAAATGGGTTCTT
GTAGAATGGGTTCAAGTAAATCAAATTCTGTCGTCAATGAAAATGGTGAATCTTGGGATG
TTAAAAGATTATTCATTGCCGATGGTTCTGTATTACCAAGTTCAGTTGGTGTTAACCCAA
TGATTACAATTTATGCAATCTCTCATATAATTGCAAATCAAATCATTCAATTATATCCAC
TTCCAAATACTAATAATTTAAATAGTAATAATACTACTACTACTACAAATATTGGTAGTT
CAACAACAATAACCGCAAATTTAAATAATGATTCTCCAACTCAAATTGCTTACGAAAGAG
ATAATTAAAAAAAAAAAAAAAAAAAAAATTTAATTAACTATAAAATTTTTTTTGTCACTT
GTATTAATTTAATCTAAAAAAAAAAAAAA
Length of 3' end seq. 439
Connected seq. ID SLC405P
Connected seq. 
>SLC405P.Seq
ATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGCCACTTAAGCACT
GGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTA
ATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACA
GCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGAT
CCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCA
ACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACA
GTCAACAGACAATGTTCATCAGGTTTACAANCAANNGCCAATTGTGCAGCAGCAGTCAAA
GCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATG
GCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTG----
------GTATAAATCTAATCAAACCGGTATCCTTAGGGCTCATCAAATGGGTTCTTGTAG
AATGGGTTCAAGTAAATCAAATTCTGTCGTCAATGAAAATGGTGAATCTTGGGATGTTAA
AAGATTATTCATTGCCGATGGTTCTGTATTACCAAGTTCAGTTGGTGTTAACCCAATGAT
TACAATTTATGCAATCTCTCATATAATTGCAAATCAAATCATTCAATTATATCCACTTCC
AAATACTAATAATTTAAATAGTAATAATACTACTACTACTACAAATATTGGTAGTTCAAC
AACAATAACCGCAAATTTAAATAATGATTCTCCAACTCAAATTGCTTACGAAAGAGATAA
TTAAAAAAAAAAAAAAAAAAAAAATTTAATTAACTATAAAATTTTTTTTGTCACTTGTAT
TAATTTAATCTAAAAAAAAAAAAAA
Length of connected seq. 975
Full length Seq ID -
Full length Seq. -
Length of full length seq. -