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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC404
Library SL
(Link to library)
Clone ID SLC404
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03918-1
Original site URL
Representative seq. ID SLC404E
(Link to Original site)
Representative DNA sequence 
>SLC404 (SLC404Q) /CSM/SL/SLC4-A/SLC404Q.Seq.d/
ACATTTCTTGGTTAACTGAAAGAAAACTTTGTAACAATGGTTACGTTATCCCTGGTGTAC
AATTACATGCTGTTTGGCACGCTCTCACTGGTTTGGCTGGTTTCTATTATATTCAATTCT
TTATAACTTCTTGTTTAGAAAAACATGGTTATAAAACTAAATTAAATTGGAATTATGGTA
TTGCCTCTGTTCGTGGTTTTATTAAATCTTATTAATAAAAGATATATAT
sequence update 1998. 5. 2
Translated Amino Acid sequence 
ISWLTERKLCNNGYVIPGVQLHAVWHALTGLAGFYYIQFFITSCLEKHGYKTKLNWNYGI
ASVRGFIKSY**kiy
Translated Amino Acid sequence (All Frames) 
Frame A:
tflg*lkenfvtmvtlslvynymlfgtlslvwlvsiifnsl*llv*knmvikln*igimv
lplfvvllnlinkryi


Frame B:
hflvn*kktl*qwlrypwctitcclarshwfgwfllysilynflfrktwl*n*iklelwy
clcswfy*illikdiy


Frame C:
ISWLTERKLCNNGYVIPGVQLHAVWHALTGLAGFYYIQFFITSCLEKHGYKTKLNWNYGI
ASVRGFIKSY**kiy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC404 (SLC404Q) /CSM/SL/SLC4-A/SLC404Q.Seq.d/                        454   e-127
SSJ480 (SSJ480Q) /CSM/SS/SSJ4-D/SSJ480Q.Seq.d/                         42   0.003
SSD833 (SSD833Q) /CSM/SS/SSD8-B/SSD833Q.Seq.d/                         42   0.003
AFM358 (AFM358Q) /CSM/AF/AFM3-C/AFM358Q.Seq.d/                         42   0.003
VHQ115 (VHQ115Q) /CSM/VH/VHQ1-A/VHQ115Q.Seq.d/                         36   0.22
VHI629 (VHI629Q) /CSM/VH/VHI6-B/VHI629Q.Seq.d/                         34   0.85
SSK174 (SSK174Q) /CSM/SS/SSK1-D/SSK174Q.Seq.d/                         34   0.85
SSB356 (SSB356Q) /CSM/SS/SSB3-C/SSB356Q.Seq.d/                         34   0.85
SHK355 (SHK355Q) /CSM/SH/SHK3-C/SHK355Q.Seq.d/                         34   0.85
SFI306 (SFI306Q) /CSM/SF/SFI3-A/SFI306Q.Seq.d/                         34   0.85
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034534) Dictyostelium discoideum slug cDNA, clone SLC404.      454   e-124  1
(AP004962) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.13   1
(AM435419) Vitis vinifera contig VV78X268883.3, whole genome...    48   0.13   1
(AC197444) Zea mays chromosome 4 clone CH201-139A15; ZMMBBc0...    48   0.13   1
(CG131452) PUIDL21TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.13   1
(CG120515) PUIIU39TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.13   1
(CC391595) PUHOI30TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.13   1
(BZ737060) OGEDV80TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    48   0.13   1
(BH161259) ENTSB28TF Entamoeba histolytica Sheared DNA Entam...    46   0.53   1
(ED812830) ML__Ba0075J08r ML__Ba Mimulus lewisii genomic, ge...    46   0.53   1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT066530_1(BT066530|pid:none) Zea mays full-length cDNA clone ZM...    36   0.48
BT068094_1(BT068094|pid:none) Zea mays full-length cDNA clone ZM...    34   1.4
BT041064_1(BT041064|pid:none) Zea mays full-length cDNA clone ZM...    34   1.4
AK004287_1(AK004287|pid:none) Mus musculus 18-day embryo whole b...    33   4.1
AK294978_1(AK294978|pid:none) Homo sapiens cDNA FLJ50957 complet...    33   4.1
AK295142_1(AK295142|pid:none) Homo sapiens cDNA FLJ57303 complet...    33   4.1
AK002100_1(AK002100|pid:none) Homo sapiens cDNA FLJ11238 fis, cl...    33   4.1
(Q9D099) RecName: Full=Alkaline ceramidase 3;          Short=Alk...    33   4.1
AK017361_1(AK017361|pid:none) Mus musculus 6 days neonate head c...    33   4.1
AB167539_1(AB167539|pid:none) Megabalanus volcano mitochondrial ...    32   5.3
protein update 2009. 7. 4
PSORT 

 psg: 0.85  gvh: 0.53  alm: 0.42  top: 0.60  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLC404 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC404E
Full length Seq. 
>SLC404E.Seq
ACATTTCTTGGTTAACTGAAAGAAAACTTTGTAACAATGGTTACGTTATCCCTGGTGTAC
AATTACATGCTGTTTGGCACGCTCTCACTGGTTTGGCTGGTTTCTATTATATTCAATTCT
TTATAACTTCTTGTTTAGAAAAACATGGTTATAAAACTAAATTAAATTGGAATTATGGTA
TTGCCTCTGTTCGTGGTTTTATTAAATCTTATTAATAAAAGATATATAT
Length of full length seq. 229