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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC403
Library SL
(Link to library)
Clone ID SLC403
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16252-1
Original site URL
Representative seq. ID SLC403Z
(Link to Original site)
Representative DNA sequence 
>SLC403 (SLC403Q) /CSM/SL/SLC4-A/SLC403Q.Seq.d/
XXXXXXXXXXTTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAAT
TAACAGCATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAA
GAATTAAGACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAA
TTGGTTCAGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTG
TCATGGTTAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTG
GTTTAGGTACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAAT
ACAATCAACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAA
CTTTCCGTAAATTTTAATTTTACTCATAATATGTGAAACAAAACTAAAAAAAAAAAAAAG
AATAAAAAAAATAAAAAAAATA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---SIEDPFDQDDWESYTKLTASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQI
GSVTESIRAALDSKNASWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKY
NQLVRINEELGENHNYAGLTFRKF*fys*yvkqn*kkkke*kk*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---SIEDPFDQDDWESYTKLTASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQI
GSVTESIRAALDSKNASWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKY
NQLVRINEELGENHNYAGLTFRKF*fys*yvkqn*kkkke*kk*kk


Frame B:
---qlkihlikmignhtln*qhqlifkllvmiyllptqkelrlvlkrkhvmlfy*kltkl
vqslnqfvplltqrmhhgvswlaivqvklkipslli*llv*vlvklklvlhvdqkd*pnt
inlleltks*vktitmlv*lsvnfnfthnm*nktkkkkknkknkkn


Frame C:
---n*rsi*sr*lgiih*insis*ysncw**ftcyqprkn*dwy*kesm*csfiks*pnw
fsh*inscrs*lkecimgchg*psfr*n*rylhc*fscwfrywsn*nwcsm*irkisqiq
stc*n*rrvr*kp*lcwfnfp*ililliicetklkkkkrikkikki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI435 (VSI435Q) /CSM/VS/VSI4-B/VSI435Q.Seq.d/                        902   0.0
SSM734 (SSM734Q) /CSM/SS/SSM7-B/SSM734Q.Seq.d/                        902   0.0
SSM479 (SSM479Q) /CSM/SS/SSM4-D/SSM479Q.Seq.d/                        902   0.0
SSI448 (SSI448Q) /CSM/SS/SSI4-B/SSI448Q.Seq.d/                        902   0.0
SLF154 (SLF154Q) /CSM/SL/SLF1-C/SLF154Q.Seq.d/                        902   0.0
SLE731 (SLE731Q) /CSM/SL/SLE7-B/SLE731Q.Seq.d/                        902   0.0
SLC403 (SLC403Q) /CSM/SL/SLC4-A/SLC403Q.Seq.d/                        902   0.0
SLC241 (SLC241Q) /CSM/SL/SLC2-B/SLC241Q.Seq.d/                        902   0.0
SLA770 (SLA770Q) /CSM/SL/SLA7-C/SLA770Q.Seq.d/                        902   0.0
SLI181 (SLI181Q) /CSM/SL/SLI1-D/SLI181Q.Seq.d/                        886   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268691) Dictyostelium discoideum vegetative cDNA clone:VS...   890   0.0    1
(AU052817) Dictyostelium discoideum slug cDNA, clone SLF154.      890   0.0    1
(AU039547) Dictyostelium discoideum slug cDNA, clone SLE731.      890   0.0    1
(AU039515) Dictyostelium discoideum slug cDNA, clone SLA770.      890   0.0    1
(AU039176) Dictyostelium discoideum slug cDNA, clone SSM479.      890   0.0    1
(AU034533) Dictyostelium discoideum slug cDNA, clone SLC403.      890   0.0    1
(AU034192) Dictyostelium discoideum slug cDNA, clone SLC241.      890   0.0    1
(C93169) Dictyostelium discoideum slug cDNA, clone SSM734.        890   0.0    1
(C90241) Dictyostelium discoideum slug cDNA, clone SSI448.        890   0.0    1
(BJ434074) Dictyostelium discoideum cDNA clone:ddv23f24, 3' ...   878   0.0    1
dna update 2009. 3. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RK5) RecName: Full=Enolase A;          EC=4.2.1.11; AltName:...   283   2e-75
EF137905_1(EF137905|pid:none) Helianthus annuus plastid enolase ...   224   9e-58
(O02654) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   220   1e-56
DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN...   219   4e-56
AF100985_1(AF100985|pid:none) Penaeus monodon phosphopyruvate hy...   218   6e-56
CR940353_640(CR940353|pid:none) Theileria annulata strain Ankara...   217   1e-55
AY398342_1(AY398342|pid:none) Danio rerio clone RK122A2D02 enola...   217   1e-55
AB025326_1(AB025326|pid:none) Eptatretus burgeri mRNA for enolas...   217   1e-55
BC092869_1(BC092869|pid:none) Danio rerio enolase 3, (beta, musc...   217   1e-55
(P26300) RecName: Full=Enolase;          EC=4.2.1.11; AltName: F...   216   2e-55
protein update 2009. 6. 1
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLC403 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC403Z
3' end seq. 
>SLC403Z.Seq
----------TTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAAT
TAACAGCATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAA
GAATTAAGACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAA
TTGGTTCAGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTG
TCATGGTTAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTG
GTTTAGGTACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAAT
ACAATCAACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAA
CTTTCCGTAAATTTTAATTTTACTCATAATATGTGAAACAAAACTAAAAAAAAAAAAAAG
AATAAAAAAAATAAAAAAAATA
Length of 3' end seq. 492
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -