SLC402
Library SL
(Link to library)
Clone ID SLC402
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16327-1
Original site URL
Representative seq. ID SLC402E
(Link to Original site)
Representative DNA sequence
>SLC402 (SLC402Q) /CSM/SL/SLC4-A/SLC402Q.Seq.d/
AAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTAAAAAAATGAAATT
CCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATGCATATGATTATTT
CACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGT
TTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTACCAATACAAATCA
ATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAACACCAGCTGTAAC
AAATACATTTACTTGCGCTGNTCAAACTTCTTCACATGCACTCGGTTCTGATTGGAGTGG
AGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAGTTACACCAACAGT
TACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCCCATCCCAAACATC
AACAACAACTGGTTCTGCTTCAACTGTTGTTGCAANTTTATCACTCATTATTTTCTCAAT
GATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAATTATTTGGCATTTTCA
AGTACAATTTTAAATTTTTCAAAAAAAAATAAAATTAAATAAATAATTAAATAAATTAAT
TAATAAAAAAAAAA
sequence update 1999. 7.13
Translated Amino Acid sequence
kkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQNPVCASVDVIQNV
CTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCAXQTSSHALGSDWSG
VCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSASTVVAXLSLIIFSM
ILSLC*f*k*qmvkiiwhfqvqf*ifqkkiklnk*lnklinkkk


Translated Amino Acid sequence (All Frames)
Frame A:
kknnqniilffvnin*kneiptyiyciiitinickci*lfhnnigqsksslcfsrchtkc
ly*glw*icplhs*cyqyksihfcriyykpmycssntscnkyiylrxsnfftctrf*lew
sl*nhchtrtnsytnsytnsytnsntntnkytksnpipninnnwfcfncccxfithyfln
dsfpllilkitngknylafsstilnfskknkik*iik*in**kk


Frame B:
kkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQNPVCASVDVIQNV
CTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCAXQTSSHALGSDWSG
VCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSASTVVAXLSLIIFSM
ILSLC*f*k*qmvkiiwhfqvqf*ifqkkiklnk*lnklinkkk


Frame C:
kkqpkyyiifckyklkk*nsnihllhyyhy*hmqmhmiisqqhwpikiqfvlq*msykmf
vlrfvvdlsvtflmlpiqinsllpnilqtnvlfk*hql*qihllalxkllhmhsvligve
fvkslphphqqlhqqlhqqlhqq*hqhqqihqiqphpkhqqqlvllqlllqxyhslfsq*
ffpfvnfknnkw*klfgifkynfkffkkk*n*inn*in*likkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC554 (SSC554Q) /CSM/SS/SSC5-C/SSC554Q.Seq.d/ 1128 0.0
SLC402 (SLC402Q) /CSM/SL/SLC4-A/SLC402Q.Seq.d/ 1128 0.0
SSI240 (SSI240Q) /CSM/SS/SSI2-B/SSI240Q.Seq.d/ 1086 0.0
SSJ770 (SSJ770Q) /CSM/SS/SSJ7-C/SSJ770Q.Seq.d/ 1080 0.0
SSJ671 (SSJ671Q) /CSM/SS/SSJ6-C/SSJ671Q.Seq.d/ 1074 0.0
SSD348 (SSD348Q) /CSM/SS/SSD3-B/SSD348Q.Seq.d/ 1072 0.0
SSI680 (SSI680Q) /CSM/SS/SSI6-D/SSI680Q.Seq.d/ 1065 0.0
SSC338 (SSC338Q) /CSM/SS/SSC3-B/SSC338Q.Seq.d/ 1063 0.0
SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/ 1061 0.0
SSE593 (SSE593Q) /CSM/SS/SSE5-D/SSE593Q.Seq.d/ 1057 0.0

own update 2000. 8.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ382433) Dictyostelium discoideum cDNA clone:ddc44a20, 3' ... 622 0.0 2
(BJ382397) Dictyostelium discoideum cDNA clone:ddc44i17, 3' ... 622 0.0 2
(AU061817) Dictyostelium discoideum slug cDNA, clone SLG216. 622 0.0 2
(C92288) Dictyostelium discoideum slug cDNA, clone SSD348. 622 0.0 2
(C90199) Dictyostelium discoideum slug cDNA, clone SSI240. 622 0.0 2
(C91174) Dictyostelium discoideum slug cDNA, clone SSJ770. 622 0.0 2
(AU060963) Dictyostelium discoideum slug cDNA, clone SLC402. 622 0.0 2
(M20909) Dictyostelium discoideum cell surface glycoprotein ... 622 0.0 2
(X15980) Dictyostelium discoideum D19 gene 5'-flanking region. 622 0.0 2
(BJ378426) Dictyostelium discoideum cDNA clone:ddc31l23, 3' ... 622 0.0 2
dna update 2009. 3. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur... 50 5e-05
A98322_1(A98322|pid:none) Sequence 1 from Patent WO9913081. 41 0.037

protein update 2009. 3. 4
PSORT

psg: 0.96 gvh: 0.78 alm: 0.21 top: 0.17 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 1.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for SLC402 is pla

5' end seq. ID SLC402F
5' end seq.
>SLC402F.Seq
AAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTAAAAAAATGAAATT
CCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATGCATATGATTATTT
CACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGT
TTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTACCAATACAAATCA
ATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAACACCAGCTGTAAC
AAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTTCTGATTGGAGTGG
AGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAGTTACACCAACAGT
TACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCCCATCCCAAACATC
AACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACTCATTATTTTCTCAAT
GATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAATTATTTGGCATTTTCA
AGTACAATTTTAAATTTTTCAAAAAAAAATAAAATTAAATAAATAATTAAATAAATTAAT
T----------
Length of 5' end seq. 661
3' end seq. ID SLC402Z
3' end seq.
>SLC402Z.Seq
----------TCAAGTAACACCAGCTGTAACAAATACATTTACTTGCGCTGGTCAAACTT
CTTCACATGCACTCGGTTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCAC
CAACAGTTACACCAACAGTTACACCAACAGTTACACCAACAGTAACACCAACACCAACAA
ATACACCAAATCCAACCCCATCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTTG
TTGCAATTTTATCACTCATTATTTTCTCAATGATTCTTTCCCTTTGTTAATTTTAAAAAT
AACAAATGGTAAAAATTATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAAAAAAA
TAAAATTAAATAAATAATTAAATAAATTAATTAATAAAAAAAAAA
Length of 3' end seq. 395
Connected seq. ID SLC402P
Connected seq.
>SLC402P.Seq
AAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTAAAAAAATGAAATT
CCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATGCATATGATTATTT
CACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGT
TTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTACCAATACAAATCA
ATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAACACCAGCTGTAAC
AAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTTCTGATTGGAGTGG
AGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAGTTACACCAACAGT
TACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCCCATCCCAAACATC
AACAACAACTGGTTCTGCTTCAACTGTTGTTGCAAGTTTATCACTCATTATTTTCTCAAT
GATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAATTATTTGGCATTTTCA
AGTACAATTTTAAATTTTTCAAAAAAAAATAAAATTAAATAAATAATTAAATAAATTAAT
T----------TCAAGTAACACCAGCTGTAACAAATACATTTACTTGCGCTGGTCAAACT
TCTTCACATGCACTCGGTTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACCCGCA
CCAACAGTTACACCAACAGTTACACCAACAGTTACACCAACAGTAACACCAACACCAACA
AATACACCAAATCCAACCCCATCCCAAACATCAACAACAACTGGTTCTGCTTCAACTGTT
GTTGCAATTTTATCACTCATTATTTTCTCAATGATTCTTTCCCTTTGTTAATTTTAAAAA
TAACAAATGGTAAAAATTATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAAAAAA
ATAAAATTAAATAAATAATTAAATAAATTAATTAATAAAAAAAAAA
Length of connected seq. 1056
Full length Seq ID SLC402E
Full length Seq.
>SLC402E.Seq
AAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTAAAAAAATGAAATT
CCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATGCATATGATTATTT
CACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGT
TTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTACCAATACAAATCA
ATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAACACCAGCTGTAAC
AAATACATTTACTTGCGCTGNTCAAACTTCTTCACATGCACTCGGTTCTGATTGGAGTGG
AGTTTGTAAAATCACTGCCACACCCGCACCAACAGTTACACCAACAGTTACACCAACAGT
TACACCAACAGTAACACCAACACCAACAAATACACCAAATCCAACCCCATCCCAAACATC
AACAACAACTGGTTCTGCTTCAACTGTTGTTGCAANTTTATCACTCATTATTTTCTCAAT
GATTCTTTCCCTTTGTTAATTTTAAAAATAACAAATGGTAAAAATTATTTGGCATTTTCA
AGTACAATTTTAAATTTTTCAAAAAAAAATAAAATTAAATAAATAATTAAATAAATTAAT
TAATAAAAAAAAAA
Length of full length seq. 674